1vp4: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1vp4.gif|left|200px]]


{{Structure
==Crystal structure of a putative aminotransferase (tm1131) from thermotoga maritima msb8 at 1.82 A resolution==
|PDB= 1vp4 |SIZE=350|CAPTION= <scene name='initialview01'>1vp4</scene>, resolution 1.82&Aring;
<StructureSection load='1vp4' size='340' side='right'caption='[[1vp4]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=PLP:PYRIDOXAL-5&#39;-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=UNL:'>UNL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene> and <scene name='pdbligand=FMT:FORMIC ACID'>FMT</scene>
<table><tr><td colspan='2'>[[1vp4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VP4 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
|GENE= TM1131 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 Thermotoga maritima MSB8])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vp4 OCA], [https://pdbe.org/1vp4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vp4 RCSB], [https://www.ebi.ac.uk/pdbsum/1vp4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vp4 ProSAT], [https://www.topsan.org/Proteins/JCSG/1vp4 TOPSAN]</span></td></tr>
}}
</table>
 
== Function ==
'''Crystal structure of Aminotransferase, putative (TM1131) from Thermotoga maritima at 1.82 A resolution'''
[https://www.uniprot.org/uniprot/Q9X0L5_THEMA Q9X0L5_THEMA]  
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
1VP4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VP4 OCA].
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vp/1vp4_consurf.spt"</scriptWhenChecked>
[[Category: Thermotoga maritima msb8]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: EDO]]
  </jmolCheckbox>
[[Category: FMT]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vp4 ConSurf].
[[Category: PLP]]
<div style="clear:both"></div>
[[Category: UNL]]
__TOC__
[[Category: aminotransferase]]
</StructureSection>
[[Category: jcsg]]
[[Category: Large Structures]]
[[Category: joint center for structural genomic]]
[[Category: Thermotoga maritima MSB8]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: putative]]
[[Category: structural genomic]]
[[Category: tm1131]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 23 14:01:30 2008''
Retrieved from "https://proteopedia.org/1vp4"