1yw6: Difference between revisions

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==Crystal Structure of Succinylglutamate Desuccinylase from Escherichia coli, Northeast Structural Genomics Target ET72.==
==Crystal Structure of Succinylglutamate Desuccinylase from Escherichia coli, Northeast Structural Genomics Target ET72.==
<StructureSection load='1yw6' size='340' side='right' caption='[[1yw6]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
<StructureSection load='1yw6' size='340' side='right'caption='[[1yw6]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1yw6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YW6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YW6 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1yw6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YW6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YW6 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yw6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yw6 OCA], [https://pdbe.org/1yw6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yw6 RCSB], [https://www.ebi.ac.uk/pdbsum/1yw6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yw6 ProSAT], [https://www.topsan.org/Proteins/NESGC/1yw6 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yw6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yw6 OCA], [http://pdbe.org/1yw6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yw6 RCSB], [http://www.ebi.ac.uk/pdbsum/1yw6 PDBsum], [http://www.topsan.org/Proteins/NESGC/1yw6 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/ASTE_ECOLI ASTE_ECOLI]] Transforms N(2)-succinylglutamate into succinate and glutamate.<ref>PMID:9696779</ref>
[https://www.uniprot.org/uniprot/ASTE_ECOLI ASTE_ECOLI] Transforms N(2)-succinylglutamate into succinate and glutamate.<ref>PMID:9696779</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/1yw6_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/1yw6_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yw6 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
== References ==
== References ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus coli migula 1895]]
[[Category: Escherichia coli]]
[[Category: Acton, T B]]
[[Category: Large Structures]]
[[Category: Ciano, M]]
[[Category: Acton TB]]
[[Category: Forouhar, F]]
[[Category: Ciano M]]
[[Category: Hunt, J F]]
[[Category: Forouhar F]]
[[Category: Kuzin, A P]]
[[Category: Hunt JF]]
[[Category: Montelione, G T]]
[[Category: Kuzin AP]]
[[Category: Structural genomic]]
[[Category: Montelione GT]]
[[Category: Tong, L]]
[[Category: Tong L]]
[[Category: Yong, W]]
[[Category: Yong W]]
[[Category: Alpha-beta protein]]
[[Category: Hydrolase]]
[[Category: Nesg]]
[[Category: PSI, Protein structure initiative]]
Retrieved from "https://proteopedia.org/1yw6"