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==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis==
==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis==
<StructureSection load='2otn' size='340' side='right' caption='[[2otn]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='2otn' size='340' side='right'caption='[[2otn]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_(strain_ames) Bacillus anthracis (strain ames)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTN FirstGlance]. <br>
<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_str._Ames Bacillus anthracis str. Ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTN FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dapF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis (strain Ames)])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [https://pdbe.org/2otn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [https://www.ebi.ac.uk/pdbsum/2otn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otn ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [http://pdbe.org/2otn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [http://www.ebi.ac.uk/pdbsum/2otn PDBsum]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/DAPF_BACAN DAPF_BACAN]] Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (By similarity).[HAMAP-Rule:MF_00197]  
[https://www.uniprot.org/uniprot/DAPF_BACAN DAPF_BACAN] Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (By similarity).[HAMAP-Rule:MF_00197]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otn_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otn_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otn ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Diaminopimelate epimerase]]
[[Category: Bacillus anthracis str. Ames]]
[[Category: Fukuda, K]]
[[Category: Large Structures]]
[[Category: Jaroszewski, L]]
[[Category: Fukuda K]]
[[Category: Liddington, R C]]
[[Category: Jaroszewski L]]
[[Category: Matho, M H]]
[[Category: Liddington RC]]
[[Category: Roper, D]]
[[Category: Matho MH]]
[[Category: Santelli, E]]
[[Category: Roper D]]
[[Category: Bacillus anthracis diaminopimelate epimerase]]
[[Category: Santelli E]]
[[Category: Dap]]
[[Category: Isomerase]]
[[Category: Lanthionine]]
[[Category: Lysine metabolism]]
Retrieved from "https://proteopedia.org/2otn"