2dhm: Difference between revisions

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==Solution structure of the BolA protein from Escherichia coli==
==Solution structure of the BolA protein from Escherichia coli==
<StructureSection load='2dhm' size='340' side='right' caption='[[2dhm]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
<StructureSection load='2dhm' size='340' side='right'caption='[[2dhm]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2dhm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecow3 Ecow3]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DHM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DHM FirstGlance]. <br>
<table><tr><td colspan='2'>[[2dhm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_str._K-12_substr._W3110 Escherichia coli str. K-12 substr. W3110]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DHM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DHM FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bolA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316407 ECOW3])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dhm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dhm OCA], [http://pdbe.org/2dhm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dhm RCSB], [http://www.ebi.ac.uk/pdbsum/2dhm PDBsum], [http://www.topsan.org/Proteins/RSGI/2dhm TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dhm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dhm OCA], [https://pdbe.org/2dhm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dhm RCSB], [https://www.ebi.ac.uk/pdbsum/2dhm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dhm ProSAT], [https://www.topsan.org/Proteins/RSGI/2dhm TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/BOLA_ECOLI BOLA_ECOLI]] Plays an important role in general stress response (heat shock, acidic stress, oxidative stress, carbon-starvation stress and osmotic shock). Involved in morphogenetic pathway. Has a role in the induction of the expression of dacA (PBP5), dacC (PBP6) and ampC.<ref>PMID:10361282</ref> <ref>PMID:12354237</ref>
[https://www.uniprot.org/uniprot/BOLA_ECOLI BOLA_ECOLI] Plays an important role in general stress response (heat shock, acidic stress, oxidative stress, carbon-starvation stress and osmotic shock). Involved in morphogenetic pathway. Has a role in the induction of the expression of dacA (PBP5), dacC (PBP6) and ampC.<ref>PMID:10361282</ref> <ref>PMID:12354237</ref>  
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/2dhm_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/2dhm_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dhm ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
== References ==
== References ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Ecow3]]
[[Category: Escherichia coli str. K-12 substr. W3110]]
[[Category: Kasai, T]]
[[Category: Large Structures]]
[[Category: Kigawa, T]]
[[Category: Kasai T]]
[[Category: Koshiba, S]]
[[Category: Kigawa T]]
[[Category: Structural genomic]]
[[Category: Koshiba S]]
[[Category: Yokoyama, S]]
[[Category: Yokoyama S]]
[[Category: Morphogene]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Protein binding]]
[[Category: Rsgi]]
[[Category: Stationary-phase]]
[[Category: Stress-induced]]
Retrieved from "https://proteopedia.org/2dhm"