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[[Image:2yzj.jpg|left|200px]]


{{Structure
==Crystal structure of dCTP deaminase from Sulfolobus tokodaii==
|PDB= 2yzj |SIZE=350|CAPTION= <scene name='initialview01'>2yzj</scene>, resolution 1.66&Aring;
<StructureSection load='2yzj' size='340' side='right'caption='[[2yzj]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=DUD:DEOXYURIDINE-5&#39;-DIPHOSPHATE'>DUD</scene> and <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>
<table><tr><td colspan='2'>[[2yzj]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZJ FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUD:DEOXYURIDINE-5-DIPHOSPHATE'>DUD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzj OCA], [https://pdbe.org/2yzj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzj RCSB], [https://www.ebi.ac.uk/pdbsum/2yzj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzj ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzj TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of dCTP deaminase from Sulfolobus tokodaii'''
== Function ==
 
[https://www.uniprot.org/uniprot/F9VNI5_SULTO F9VNI5_SULTO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2YZJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZJ OCA].  
Check<jmol>
[[Category: Single protein]]
  <jmolCheckbox>
[[Category: Sulfolobus tokodaii]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzj_consurf.spt"</scriptWhenChecked>
[[Category: Baba, S.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Kanagawa, M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Kawai, G.]]
  </jmolCheckbox>
[[Category: Kuramitsu, S.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzj ConSurf].
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
<div style="clear:both"></div>
[[Category: Sampei, G.]]
__TOC__
[[Category: Yokoyama, S.]]
</StructureSection>
[[Category: DUD]]
[[Category: Large Structures]]
[[Category: MG]]
[[Category: Sulfurisphaera tokodaii]]
[[Category: TRS]]
[[Category: Baba S]]
[[Category: all beta protein]]
[[Category: Kanagawa M]]
[[Category: hypothetical protein]]
[[Category: Kawai G]]
[[Category: national project on protein structural and functional analyse]]
[[Category: Kuramitsu S]]
[[Category: nppsfa]]
[[Category: Sampei G]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: Yokoyama S]]
[[Category: rsgi]]
[[Category: structural genomic]]
[[Category: unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 23 15:55:57 2008''

Latest revision as of 08:40, 30 October 2024

Crystal structure of dCTP deaminase from Sulfolobus tokodaii

2yzj, resolution 1.66Å

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