2c9e: Difference between revisions

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==Peridinin-chlorophyll a protein, high-salt form==
==Peridinin-chlorophyll a protein, high-salt form==
<StructureSection load='2c9e' size='340' side='right' caption='[[2c9e]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='2c9e' size='340' side='right'caption='[[2c9e]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2c9e]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amphidinium_carterae Amphidinium carterae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C9E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2C9E FirstGlance]. <br>
<table><tr><td colspan='2'>[[2c9e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amphidinium_carterae Amphidinium carterae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C9E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2C9E FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PID:PERIDININ'>PID</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2c9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c9e OCA], [http://pdbe.org/2c9e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2c9e RCSB], [http://www.ebi.ac.uk/pdbsum/2c9e PDBsum]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PID:PERIDININ'>PID</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2c9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c9e OCA], [https://pdbe.org/2c9e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2c9e RCSB], [https://www.ebi.ac.uk/pdbsum/2c9e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2c9e ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/O76183_AMPCA O76183_AMPCA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c9/2c9e_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c9/2c9e_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2c9e ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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</StructureSection>
</StructureSection>
[[Category: Amphidinium carterae]]
[[Category: Amphidinium carterae]]
[[Category: Hiller, R G]]
[[Category: Large Structures]]
[[Category: Hofmann, E]]
[[Category: Hiller RG]]
[[Category: Schulte, T]]
[[Category: Hofmann E]]
[[Category: Sharples, F P]]
[[Category: Schulte T]]
[[Category: Carotenoid]]
[[Category: Sharples FP]]
[[Category: Chloroplast]]
[[Category: Light harvesting protein]]
[[Category: Light-harvesting polypeptide]]
[[Category: Multigene family]]
[[Category: Photosynthesis]]
[[Category: Transit peptide]]
Retrieved from "https://proteopedia.org/2c9e"