1vmf: Difference between revisions

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[[Image:1vmf.gif|left|200px]]


{{Structure
==CRYSTAL STRUCTURE OF a YBJQ-LIKE FOLD PROTEIN OF UNKNOWN FUNCTION (BH3498) FROM BACILLUS HALODURANS AT 1.46 A RESOLUTION==
|PDB= 1vmf |SIZE=350|CAPTION= <scene name='initialview01'>1vmf</scene>, resolution 1.46&Aring;
<StructureSection load='1vmf' size='340' side='right'caption='[[1vmf]], [[Resolution|resolution]] 1.46&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
<table><tr><td colspan='2'>[[1vmf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans Alkalihalobacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VMF FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.46&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0432 COG0432]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vmf OCA], [https://pdbe.org/1vmf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vmf RCSB], [https://www.ebi.ac.uk/pdbsum/1vmf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vmf ProSAT], [https://www.topsan.org/Proteins/JCSG/1vmf TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vmf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vmf OCA], [http://www.ebi.ac.uk/pdbsum/1vmf PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1vmf RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/Q9K772_HALH5 Q9K772_HALH5]
'''Crystal structure of a YbjQ-like fold proteins with unknown function (19176122) from Bacillus halodurans at 1.46 A resolution'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
1VMF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VMF OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/1vmf_consurf.spt"</scriptWhenChecked>
[[Category: Bacillus halodurans]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: JCSG, Joint Center for Structural Genomics.]]
  </jmolCheckbox>
[[Category: 10176122]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vmf ConSurf].
[[Category: hypothetical protein]]
<div style="clear:both"></div>
[[Category: jcsg]]
__TOC__
[[Category: joint center for structural genomic]]
</StructureSection>
[[Category: protein structure initiative]]
[[Category: Alkalihalobacillus halodurans]]
[[Category: psi]]
[[Category: Large Structures]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Mar 25 23:27:18 2008''
Retrieved from "https://proteopedia.org/1vmf"