1ybx: Difference between revisions

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[[Image:1ybx.gif|left|200px]]


{{Structure
==Conserved hypothetical protein Cth-383 from Clostridium thermocellum==
|PDB= 1ybx |SIZE=350|CAPTION= <scene name='initialview01'>1ybx</scene>, resolution 1.800&Aring;
<StructureSection load='1ybx' size='340' side='right'caption='[[1ybx]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>
<table><tr><td colspan='2'>[[1ybx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBX FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK00153 PRK00153]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybx OCA], [https://pdbe.org/1ybx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybx RCSB], [https://www.ebi.ac.uk/pdbsum/1ybx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybx ProSAT], [https://www.topsan.org/Proteins/SECSG/1ybx TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybx OCA], [http://www.ebi.ac.uk/pdbsum/1ybx PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1ybx RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/Y2143_ACET2 Y2143_ACET2] Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.[HAMAP-Rule:MF_00274]
'''Conserved hypothetical protein Cth-383 from Clostridium thermocellum'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
1YBX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBX OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybx_consurf.spt"</scriptWhenChecked>
[[Category: Clostridium thermocellum]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chang, J.]]
  </jmolCheckbox>
[[Category: Chang, S H.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybx ConSurf].
[[Category: Chen, L.]]
<div style="clear:both"></div>
[[Category: Florence, Q.]]
__TOC__
[[Category: Habel, J.]]
</StructureSection>
[[Category: Horanyi, P.]]
[[Category: Acetivibrio thermocellus]]
[[Category: Kataeva, I.]]
[[Category: Large Structures]]
[[Category: Lee, D.]]
[[Category: Chang J]]
[[Category: Lin, D.]]
[[Category: Chang S-H]]
[[Category: Liu, Z J.]]
[[Category: Chen L]]
[[Category: Ljundahl, L.]]
[[Category: Florence Q]]
[[Category: Nguyen, J.]]
[[Category: Habel J]]
[[Category: Rose, J.]]
[[Category: Horanyi P]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Kataeva I]]
[[Category: Tempel, W.]]
[[Category: Lee D]]
[[Category: Wang, B C.]]
[[Category: Lin D]]
[[Category: Xu, H.]]
[[Category: Liu Z-J]]
[[Category: Zhang, H.]]
[[Category: Ljundahl L]]
[[Category: Zhao, M.]]
[[Category: Nguyen J]]
[[Category: Zhou, W.]]
[[Category: Rose J]]
[[Category: clostridium thermocellum]]
[[Category: Tempel W]]
[[Category: conserved hypothetical protein]]
[[Category: Wang B-C]]
[[Category: protein structure initiative]]
[[Category: Xu H]]
[[Category: psi]]
[[Category: Zhang H]]
[[Category: secsg]]
[[Category: Zhao M]]
[[Category: southeast collaboratory for structural genomic]]
[[Category: Zhou W]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:14:30 2008''

Latest revision as of 05:02, 17 October 2024

Conserved hypothetical protein Cth-383 from Clostridium thermocellum

1ybx, resolution 1.80Å

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