1z3d: Difference between revisions

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[[Image:1z3d.gif|left|200px]]


{{Structure
==Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans==
|PDB= 1z3d |SIZE=350|CAPTION= <scene name='initialview01'>1z3d</scene>, resolution 2.50&Aring;
<StructureSection load='1z3d' size='340' side='right'caption='[[1z3d]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[1z3d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z3D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z3D FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquitin--protein_ligase Ubiquitin--protein ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.19 6.3.2.19] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
|GENE= ubc-1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 Caenorhabditis elegans])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z3d OCA], [https://pdbe.org/1z3d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z3d RCSB], [https://www.ebi.ac.uk/pdbsum/1z3d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z3d ProSAT]</span></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00195 UBCc]</span>
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z3d OCA], [http://www.ebi.ac.uk/pdbsum/1z3d PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1z3d RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/UBC1_CAEEL UBC1_CAEEL] Catalyzes the covalent attachment of ubiquitin to other proteins.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z3/1z3d_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z3d ConSurf].
<div style="clear:both"></div>


'''Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans'''
==See Also==
 
*[[3D structures of ubiquitin conjugating enzyme|3D structures of ubiquitin conjugating enzyme]]
 
__TOC__
==About this Structure==
</StructureSection>
1Z3D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z3D OCA].
[[Category: Caenorhabditis elegans]]
[[Category: Caenorhabditis elegans]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Ubiquitin--protein ligase]]
[[Category: DiGiammarino E]]
[[Category: DiGiammarino, E.]]
[[Category: Gavira JA]]
[[Category: Gavira, J A.]]
[[Category: Liu ZJ]]
[[Category: Liu, Z J.]]
[[Category: Meehan E]]
[[Category: Meehan, E.]]
[[Category: Ng JD]]
[[Category: Ng, J D.]]
[[Category: Tempel W]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Toh D]]
[[Category: Tempel, W.]]
[[Category: Wang BC]]
[[Category: Toh, D.]]
[[Category: Wang, B C.]]
[[Category: crystal growth]]
[[Category: e2]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: secsg]]
[[Category: southeast collaboratory for structural genomic]]
[[Category: structural genomic]]
[[Category: ubiquitin-conjugating]]
[[Category: ubiquitination]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:17:17 2008''
Retrieved from "https://proteopedia.org/1z3d"