2ap1: Difference between revisions

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[[Image:2ap1.gif|left|200px]]


{{Structure
==Crystal structure of the putative regulatory protein==
|PDB= 2ap1 |SIZE=350|CAPTION= <scene name='initialview01'>2ap1</scene>, resolution 1.90&Aring;
<StructureSection load='2ap1' size='340' side='right'caption='[[2ap1]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
<table><tr><td colspan='2'>[[2ap1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AP1 FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
|GENE= ycfX ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=602 Salmonella typhimurium])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK09557 PRK09557], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1940 NagC]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ap1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap1 OCA], [https://pdbe.org/2ap1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ap1 RCSB], [https://www.ebi.ac.uk/pdbsum/2ap1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ap1 ProSAT], [https://www.topsan.org/Proteins/MCSG/2ap1 TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ap1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap1 OCA], [http://www.ebi.ac.uk/pdbsum/2ap1 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ap1 RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/NAGK_SALTY NAGK_SALTY] Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P (By similarity).
'''Crystal structure of the putative regulatory protein'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2AP1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP1 OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2ap1_consurf.spt"</scriptWhenChecked>
[[Category: Salmonella typhimurium]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Anderson, W F.]]
  </jmolCheckbox>
[[Category: Brunzelle, J S.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ap1 ConSurf].
[[Category: Collart, F R.]]
<div style="clear:both"></div>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
__TOC__
[[Category: Minasov, G.]]
</StructureSection>
[[Category: Shuvalova, L.]]
[[Category: Large Structures]]
[[Category: mcsg]]
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
[[Category: midwest center for structural genomic]]
[[Category: Anderson WF]]
[[Category: protein structure initiative]]
[[Category: Brunzelle JS]]
[[Category: psi]]
[[Category: Collart FR]]
[[Category: putative kinase]]
[[Category: Joachimiak A]]
[[Category: structural genomic]]
[[Category: Minasov G]]
[[Category: zinc binding protein]]
[[Category: Shuvalova L]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:20:45 2008''

Latest revision as of 09:13, 14 February 2024

Crystal structure of the putative regulatory protein

2ap1, resolution 1.90Å

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