2gdm: Difference between revisions

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==LEGHEMOGLOBIN (OXY)==
==LEGHEMOGLOBIN (OXY)==
<StructureSection load='2gdm' size='340' side='right' caption='[[2gdm]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='2gdm' size='340' side='right'caption='[[2gdm]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2gdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdm 1gdm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GDM FirstGlance]. <br>
<table><tr><td colspan='2'>[[2gdm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GDM FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gdm OCA], [http://pdbe.org/2gdm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gdm RCSB], [http://www.ebi.ac.uk/pdbsum/2gdm PDBsum]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gdm OCA], [https://pdbe.org/2gdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gdm RCSB], [https://www.ebi.ac.uk/pdbsum/2gdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gdm ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/LGB2_LUPLU LGB2_LUPLU]] Provides oxygen to the bacteroids. This role is essential for symbiotic nitrogen fixation.  
[https://www.uniprot.org/uniprot/LGB2_LUPLU LGB2_LUPLU] Provides oxygen to the bacteroids. This role is essential for symbiotic nitrogen fixation.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/2gdm_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/2gdm_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gdm ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Lupinus luteus]]
[[Category: Lupinus luteus]]
[[Category: Dodson, G G]]
[[Category: Dodson GG]]
[[Category: Harutyunyan, E H]]
[[Category: Harutyunyan EH]]
[[Category: Kuranova, I P]]
[[Category: Kuranova IP]]
[[Category: Obmolova, G V]]
[[Category: Obmolova GV]]
[[Category: Perutz, M F]]
[[Category: Perutz MF]]
[[Category: Popov, A N]]
[[Category: Popov AN]]
[[Category: Rusakov, A A]]
[[Category: Rusakov AA]]
[[Category: Safonova, T N]]
[[Category: Safonova TN]]
[[Category: Teplyakov, A V]]
[[Category: Teplyakov AV]]
[[Category: Wilson, J C]]
[[Category: Wilson JC]]
[[Category: Leghemoglobin]]
[[Category: Lupine]]
[[Category: Oxygen transport]]
Retrieved from "https://proteopedia.org/2gdm"