2odf: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2odf.gif|left|200px]]


{{Structure
==The crystal structure of gene product Atu2144 from Agrobacterium tumefaciens==
|PDB= 2odf |SIZE=350|CAPTION= <scene name='initialview01'>2odf</scene>, resolution 1.90&Aring;
<StructureSection load='2odf' size='340' side='right'caption='[[2odf]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[2odf]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ODF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ODF FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3931 COG3931]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2odf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2odf OCA], [https://pdbe.org/2odf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2odf RCSB], [https://www.ebi.ac.uk/pdbsum/2odf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2odf ProSAT], [https://www.topsan.org/Proteins/MCSG/2odf TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2odf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2odf OCA], [http://www.ebi.ac.uk/pdbsum/2odf PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2odf RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/A9CI91_AGRFC A9CI91_AGRFC]
'''The crystal structure of gene product Atu2144 from Agrobacterium tumefaciens'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2ODF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ODF OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/2odf_consurf.spt"</scriptWhenChecked>
[[Category: Agrobacterium tumefaciens]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Edwards, A.]]
  </jmolCheckbox>
[[Category: Joachimiak, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2odf ConSurf].
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Savchenko, A.]]
__TOC__
[[Category: Xu, X.]]
</StructureSection>
[[Category: Zhang, R.]]
[[Category: Agrobacterium fabrum str. C58]]
[[Category: Zheng, H.]]
[[Category: Large Structures]]
[[Category: agrobacterium tumefacien]]
[[Category: Edwards A]]
[[Category: mcsg]]
[[Category: Joachimiak A]]
[[Category: midwest center for structural genomic]]
[[Category: Savchenko A]]
[[Category: protein structure initiative]]
[[Category: Xu X]]
[[Category: psi-2]]
[[Category: Zhang R]]
[[Category: structural genomic]]
[[Category: Zheng H]]
[[Category: unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:36:22 2008''
Retrieved from "https://proteopedia.org/2odf"