2ofy: Difference between revisions

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[[Image:2ofy.gif|left|200px]]


{{Structure
==Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.==
|PDB= 2ofy |SIZE=350|CAPTION= <scene name='initialview01'>2ofy</scene>, resolution 1.70&Aring;
<StructureSection load='2ofy' size='340' side='right'caption='[[2ofy]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
<table><tr><td colspan='2'>[[2ofy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OFY FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
|GENE= RHA1_ro04071 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1831 Rhodococcus sp.])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00530 HTH_XRE]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ofy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ofy OCA], [https://pdbe.org/2ofy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ofy RCSB], [https://www.ebi.ac.uk/pdbsum/2ofy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ofy ProSAT], [https://www.topsan.org/Proteins/MCSG/2ofy TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ofy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ofy OCA], [http://www.ebi.ac.uk/pdbsum/2ofy PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ofy RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/Q0S9B8_RHOJR Q0S9B8_RHOJR]
'''Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2OFY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OFY OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/of/2ofy_consurf.spt"</scriptWhenChecked>
[[Category: Rhodococcus sp.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chruszcz, M.]]
  </jmolCheckbox>
[[Category: Cymborowski, M.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ofy ConSurf].
[[Category: Edwards, A.]]
<div style="clear:both"></div>
[[Category: Joachimiak, A.]]
__TOC__
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</StructureSection>
[[Category: Minor, W.]]
[[Category: Large Structures]]
[[Category: Onopriyenko, O.]]
[[Category: Rhodococcus jostii RHA1]]
[[Category: Savchenko, A.]]
[[Category: Chruszcz M]]
[[Category: Shumilin, I A.]]
[[Category: Cymborowski M]]
[[Category: Skarina, T.]]
[[Category: Edwards A]]
[[Category: Yim, V.]]
[[Category: Joachimiak A]]
[[Category: mcsg]]
[[Category: Minor W]]
[[Category: midwest center for structural genomic]]
[[Category: Onopriyenko O]]
[[Category: protein structure initiative]]
[[Category: Savchenko A]]
[[Category: psi]]
[[Category: Shumilin IA]]
[[Category: structural genomic]]
[[Category: Skarina T]]
[[Category: transcription regulator]]
[[Category: Yim V]]
[[Category: xre-family]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:36:32 2008''

Latest revision as of 09:23, 6 November 2024

Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.

2ofy, resolution 1.70Å

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