2qde: Difference between revisions

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[[Image:2qde.gif|left|200px]]


{{Structure
==Crystal structure of mandelate racemase/muconate lactonizing family protein from Azoarcus sp. EbN1==
|PDB= 2qde |SIZE=350|CAPTION= <scene name='initialview01'>2qde</scene>, resolution 1.93&Aring;
<StructureSection load='2qde' size='340' side='right'caption='[[2qde]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=BA:BARIUM+ION'>BA</scene>
<table><tr><td colspan='2'>[[2qde]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aromatoleum_aromaticum_EbN1 Aromatoleum aromaticum EbN1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QDE FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
|GENE= AZOSEA32060, AZOSEA32140, ebA5637, ebA5652 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=76114 Azoarcus sp. EbN1])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BA:BARIUM+ION'>BA</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4948 COG4948], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03315 MLE_like]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qde OCA], [https://pdbe.org/2qde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qde RCSB], [https://www.ebi.ac.uk/pdbsum/2qde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qde ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2qde TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qde OCA], [http://www.ebi.ac.uk/pdbsum/2qde PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2qde RCSB]</span>
</table>
}}
== Function ==
[https://www.uniprot.org/uniprot/Q5P025_AROAE Q5P025_AROAE]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qd/2qde_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qde ConSurf].
<div style="clear:both"></div>


'''Crystal structure of mandelate racemase/muconate lactonizing family protein from Azoarcus sp. EbN1'''
==See Also==
 
*[[Mandelate racemase|Mandelate racemase]]
 
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
==About this Structure==
__TOC__
2QDE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Azoarcus_sp._ebn1 Azoarcus sp. ebn1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QDE OCA].
</StructureSection>
[[Category: Azoarcus sp. ebn1]]
[[Category: Aromatoleum aromaticum EbN1]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Agarwal, R.]]
[[Category: Agarwal R]]
[[Category: Burley, S K.]]
[[Category: Burley SK]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Swaminathan S]]
[[Category: Swaminathan, S.]]
[[Category: 9379a]]
[[Category: crystal structure]]
[[Category: enolase]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: psi-ii]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:42:36 2008''
Retrieved from "https://proteopedia.org/2qde"