2qik: Difference between revisions

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[[Image:2qik.gif|left|200px]]


{{Structure
==Crystal structure of YkqA from Bacillus subtilis. Northeast Structural Genomics Target SR631==
|PDB= 2qik |SIZE=350|CAPTION= <scene name='initialview01'>2qik</scene>, resolution 1.350&Aring;
<StructureSection load='2qik' size='340' side='right'caption='[[2qik]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
<table><tr><td colspan='2'>[[2qik]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QIK FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
|GENE= ykqA, ylxU, yzaB, BSU14500 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3703 ChaC], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2105 COG2105]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qik FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qik OCA], [https://pdbe.org/2qik PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qik RCSB], [https://www.ebi.ac.uk/pdbsum/2qik PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qik ProSAT], [https://www.topsan.org/Proteins/NESGC/2qik TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qik FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qik OCA], [http://www.ebi.ac.uk/pdbsum/2qik PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2qik RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/YKQA_BACSU YKQA_BACSU] Putative gamma-glutamylcyclotransferase (By similarity).
'''Crystal structure of YkqA from Bacillus subtilis. Northeast Structural Genomics Target SR631'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2QIK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIK OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qi/2qik_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qik ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Acton, T B.]]
[[Category: Acton TB]]
[[Category: Baran, M C.]]
[[Category: Baran MC]]
[[Category: Benach, J.]]
[[Category: Benach J]]
[[Category: Chen, C X.]]
[[Category: Chen CX]]
[[Category: Chen, Y.]]
[[Category: Chen Y]]
[[Category: Cunningham, K.]]
[[Category: Cunningham K]]
[[Category: Forouhar, F.]]
[[Category: Forouhar F]]
[[Category: Hunt, J F.]]
[[Category: Hunt JF]]
[[Category: Janjua, H.]]
[[Category: Janjua H]]
[[Category: Ma, L-C.]]
[[Category: Ma L-C]]
[[Category: Montelione, G T.]]
[[Category: Montelione GT]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Owens L]]
[[Category: Owens, L.]]
[[Category: Rong X]]
[[Category: Rong, X.]]
[[Category: Seetharaman J]]
[[Category: Seetharaman, J.]]
[[Category: Tong L]]
[[Category: Tong, L.]]
[[Category: nesg]]
[[Category: northeast structural genomics consortium]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: sr631]]
[[Category: structural genomic]]
[[Category: ykqa]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:43:05 2008''

Latest revision as of 05:27, 17 October 2024

Crystal structure of YkqA from Bacillus subtilis. Northeast Structural Genomics Target SR631

2qik, resolution 1.35Å

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