2r6h: Difference between revisions

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[[Image:2r6h.jpg|left|200px]]


{{Structure
==Crystal structure of the domain comprising the NAD binding and the FAD binding regions of the NADH:ubiquinone oxidoreductase, Na translocating, F subunit from Porphyromonas gingivalis==
|PDB= 2r6h |SIZE=350|CAPTION= <scene name='initialview01'>2r6h</scene>, resolution 2.95&Aring;
<StructureSection load='2r6h' size='340' side='right'caption='[[2r6h]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[2r6h]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R6H FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|GENE= nqrF, PG_2177 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 Porphyromonas gingivalis W83])
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00970 FAD_binding_6], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00175 NAD_binding_1], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2375 ViuB]</span>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nqrF, PG_2177 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r6h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6h OCA], [http://www.ebi.ac.uk/pdbsum/2r6h PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2r6h RCSB]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r6h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6h OCA], [https://pdbe.org/2r6h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r6h RCSB], [https://www.ebi.ac.uk/pdbsum/2r6h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r6h ProSAT], [https://www.topsan.org/Proteins/MCSG/2r6h TOPSAN]</span></td></tr>
}}
</table>
 
== Evolutionary Conservation ==
'''Crystal structure of the domain comprising the NAD binding and the FAD binding regions of the NADH:ubiquinone oxidoreductase, Na translocating, F subunit from Porphyromonas gingivalis'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r6/2r6h_consurf.spt"</scriptWhenChecked>
2R6H is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6H OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Porphyromonas gingivalis w83]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Joachimiak, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r6h ConSurf].
[[Category: Kim, Y.]]
<div style="clear:both"></div>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
__TOC__
[[Category: Moy, S.]]
</StructureSection>
[[Category: Mulligan, R.]]
[[Category: Large Structures]]
[[Category: alpha-beta-alpha sandwich]]
[[Category: Porgi]]
[[Category: iron]]
[[Category: Joachimiak, A]]
[[Category: iron-sulfur]]
[[Category: Kim, Y]]
[[Category: mcsg]]
[[Category: Structural genomic]]
[[Category: metal-binding]]
[[Category: Moy, S]]
[[Category: midwest center for structural genomic]]
[[Category: Mulligan, R]]
[[Category: oxidoreductase]]
[[Category: Alpha-beta-alpha sandwich]]
[[Category: protein structure initiative]]
[[Category: Iron]]
[[Category: psi-2]]
[[Category: Iron-sulfur]]
[[Category: structural genomic]]
[[Category: Mcsg]]
[[Category: ubiquinone]]
[[Category: Metal-binding]]
 
[[Category: Oxidoreductase]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:45:15 2008''
[[Category: PSI, Protein structure initiative]]
[[Category: Ubiquinone]]

Latest revision as of 04:16, 2 July 2021

Crystal structure of the domain comprising the NAD binding and the FAD binding regions of the NADH:ubiquinone oxidoreductase, Na translocating, F subunit from Porphyromonas gingivalis

2r6h, resolution 2.95Å

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