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[[Image:3b40.jpg|left|200px]]


{{Structure
==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==
|PDB= 3b40 |SIZE=350|CAPTION= <scene name='initialview01'>3b40</scene>, resolution 2.000&Aring;
<StructureSection load='3b40' size='340' side='right'caption='[[3b40]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B40 FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
|GENE= pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01301 rDP_like]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [https://pdbe.org/3b40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [https://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b40 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/Q5DIQ1_PSEAI Q5DIQ1_PSEAI]
'''Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3B40 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b4/3b40_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b40 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Single protein]]
[[Category: Almo SC]]
[[Category: Almo, S C.]]
[[Category: Bain KT]]
[[Category: Bain, K T.]]
[[Category: Bonanno JB]]
[[Category: Bonanno, J B.]]
[[Category: Burley SK]]
[[Category: Burley, S K.]]
[[Category: Dickey M]]
[[Category: Dickey, M.]]
[[Category: Fong R]]
[[Category: Fong, R.]]
[[Category: Mendoza M]]
[[Category: Mendoza, M.]]
[[Category: Patskovsky Y]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Sauder JM]]
[[Category: Patskovsky, Y.]]
[[Category: Smith D]]
[[Category: Sauder, J M.]]
[[Category: Wasserman S]]
[[Category: Smith, D.]]
[[Category: Wasserman, S.]]
[[Category: hydrolase]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:46:26 2008''

Latest revision as of 09:27, 21 February 2024

Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa

3b40, resolution 2.00Å

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