3cc9: Difference between revisions

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New page: left|200px {{Structure |PDB= 3cc9 |SIZE=350|CAPTION= <scene name='initialview01'>3cc9</scene>, resolution 2.300Å |SITE= <scene name='pdbsite=AC1:Na+Binding+Site+...
 
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[[Image:3cc9.jpg|left|200px]]


{{Structure
==Crystal structure of Plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl diphosphate==
|PDB= 3cc9 |SIZE=350|CAPTION= <scene name='initialview01'>3cc9</scene>, resolution 2.300&Aring;
<StructureSection load='3cc9' size='340' side='right'caption='[[3cc9]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+A+502'>AC1</scene>, <scene name='pdbsite=AC2:Grg+Binding+Site+For+Residue+B+501'>AC2</scene>, <scene name='pdbsite=AC3:Grg+Binding+Site+For+Residue+A+501'>AC3</scene>, <scene name='pdbsite=AC4:Grg+Binding+Site+For+Residue+D+501'>AC4</scene> and <scene name='pdbsite=AC5:Grg+Binding+Site+For+Residue+C+501'>AC5</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GRG:GERANYLGERANYL+DIPHOSPHATE'>GRG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
<table><tr><td colspan='2'>[[3cc9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax_Sal-1 Plasmodium vivax Sal-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CC9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CC9 FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
|GENE= PF11_0295, PVX_092040 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2759 Eukaryota])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GRG:GERANYLGERANYL+DIPHOSPHATE'>GRG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00685 Trans_IPPS_HT]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cc9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cc9 OCA], [https://pdbe.org/3cc9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cc9 RCSB], [https://www.ebi.ac.uk/pdbsum/3cc9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cc9 ProSAT]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cc9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cc9 OCA], [http://www.ebi.ac.uk/pdbsum/3cc9 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=3cc9 RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/A5K4U6_PLAVS A5K4U6_PLAVS]
'''Crystal structure of Plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl diphosphate'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3CC9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CC9 OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cc/3cc9_consurf.spt"</scriptWhenChecked>
[[Category: Eukaryota]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Arrowsmith, C H.]]
  </jmolCheckbox>
[[Category: Artz, J D.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cc9 ConSurf].
[[Category: Bochkarev, A.]]
<div style="clear:both"></div>
[[Category: Bountra, C.]]
__TOC__
[[Category: Cossar, D.]]
</StructureSection>
[[Category: Dunford, J.]]
[[Category: Large Structures]]
[[Category: Edwards, A M.]]
[[Category: Plasmodium vivax Sal-1]]
[[Category: Hui, R.]]
[[Category: Arrowsmith CH]]
[[Category: Kozieradzki, I.]]
[[Category: Artz JD]]
[[Category: Lew, J.]]
[[Category: Bochkarev A]]
[[Category: SGC, Structural Genomics Consortium.]]
[[Category: Bountra C]]
[[Category: Schapira, M.]]
[[Category: Cossar D]]
[[Category: Weigelt, J.]]
[[Category: Dunford J]]
[[Category: Wernimont, A K.]]
[[Category: Edwards AM]]
[[Category: Zhao, Y.]]
[[Category: Hui R]]
[[Category: farnesyl pyrophosphate synthase diphosphate]]
[[Category: Kozieradzki I]]
[[Category: lyase]]
[[Category: Lew J]]
[[Category: malaria]]
[[Category: Schapira M]]
[[Category: sgc]]
[[Category: Weigelt J]]
[[Category: structural genomic]]
[[Category: Wernimont AK]]
[[Category: structural genomics consortium]]
[[Category: Zhao Y]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 09:58:18 2008''

Latest revision as of 12:25, 30 August 2023

Crystal structure of Plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl diphosphate

3cc9, resolution 2.30Å

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