5hkh: Difference between revisions

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New page: '''Unreleased structure''' The entry 5hkh is ON HOLD Authors: Jessica, H., Volker, D., Vladimir, R., Masato, A. Description: Crystal structure of Ufm1 in complex with UBA5 [[Category: ...
 
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'''Unreleased structure'''


The entry 5hkh is ON HOLD
==Crystal structure of Ufm1 in complex with UBA5==
<StructureSection load='5hkh' size='340' side='right'caption='[[5hkh]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5hkh]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HKH FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hkh OCA], [https://pdbe.org/5hkh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hkh RCSB], [https://www.ebi.ac.uk/pdbsum/5hkh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hkh ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/UFM1_HUMAN UFM1_HUMAN] Ubiquitin-like modifier protein which binds to a number of target proteins, such as DDRGK1.<ref>PMID:15071506</ref> <ref>PMID:20018847</ref>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The covalent conjugation of ubiquitin-fold modifier 1 (UFM1) to proteins generates a signal that regulates transcription, response to cell stress, and differentiation. Ufmylation is initiated by ubiquitin-like modifier activating enzyme 5 (UBA5), which activates and transfers UFM1 to ubiquitin-fold modifier-conjugating enzyme 1 (UFC1). The details of the interaction between UFM1 and UBA5 required for UFM1 activation and its downstream transfer are however unclear. In this study, we described and characterized a combined linear LC3-interacting region/UFM1-interacting motif (LIR/UFIM) within the C terminus of UBA5. This single motif ensures that UBA5 binds both UFM1 and light chain 3/gamma-aminobutyric acid receptor-associated proteins (LC3/GABARAP), two ubiquitin (Ub)-like proteins. We demonstrated that LIR/UFIM is required for the full biological activity of UBA5 and for the effective transfer of UFM1 onto UFC1 and a downstream protein substrate both in vitro and in cells. Taken together, our study provides important structural and functional insights into the interaction between UBA5 and Ub-like modifiers, improving the understanding of the biology of the ufmylation pathway.


Authors: Jessica, H., Volker, D., Vladimir, R., Masato, A.
Structural and Functional Analysis of a Novel Interaction Motif within UFM1-activating Enzyme 5 (UBA5) Required for Binding to Ubiquitin-like Proteins and Ufmylation.,Habisov S, Huber J, Ichimura Y, Akutsu M, Rogova N, Loehr F, McEwan DG, Johansen T, Dikic I, Doetsch V, Komatsu M, Rogov VV, Kirkin V J Biol Chem. 2016 Apr 22;291(17):9025-41. doi: 10.1074/jbc.M116.715474. Epub 2016, Feb 29. PMID:26929408<ref>PMID:26929408</ref>


Description: Crystal structure of Ufm1 in complex with UBA5
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Masato, A]]
<div class="pdbe-citations 5hkh" style="background-color:#fffaf0;"></div>
[[Category: Jessica, H]]
 
[[Category: Volker, D]]
==See Also==
[[Category: Vladimir, R]]
*[[Ubiquitin-fold modifier|Ubiquitin-fold modifier]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Akutsu M]]
[[Category: Doetsch V]]
[[Category: Huber J]]
[[Category: Rogov VV]]
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