2iyi: Difference between revisions

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==STRUCTURE OF A LIGHT-INDUCED INTERMEDIATE OF THE BLUF DOMAIN OF THE RHODOBACTERIAL PROTEIN APPA==
 
<StructureSection load='2iyi' size='340' side='right' caption='[[2iyi]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
==structure of a light-induced intermediate of the BLUF domain of the rhodobacterial protein AppA==
<StructureSection load='2iyi' size='340' side='right'caption='[[2iyi]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2iyi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodococcus_capsulatus"_molisch_1907 "rhodococcus capsulatus" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IYI FirstGlance]. <br>
<table><tr><td colspan='2'>[[2iyi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IYI FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=DTU:(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTU</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.95&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1x0p|1x0p]], [[1yrx|1yrx]], [[2bun|2bun]], [[2byc|2byc]], [[2iyg|2iyg]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=DTU:(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTU</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2iyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iyi OCA], [http://pdbe.org/2iyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2iyi RCSB], [http://www.ebi.ac.uk/pdbsum/2iyi PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iyi OCA], [https://pdbe.org/2iyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iyi RCSB], [https://www.ebi.ac.uk/pdbsum/2iyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iyi ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/2iyi_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/2iyi_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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==See Also==
==See Also==
*[[BLUF domain protein|BLUF domain protein]]
*[[AppA protein BLUF domain|AppA protein BLUF domain]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Rhodococcus capsulatus molisch 1907]]
[[Category: Cereibacter sphaeroides]]
[[Category: Domratcheva, T]]
[[Category: Large Structures]]
[[Category: Jung, A]]
[[Category: Domratcheva T]]
[[Category: Reinstein, J]]
[[Category: Jung A]]
[[Category: Schlichting, I]]
[[Category: Reinstein J]]
[[Category: Shoeman, R L]]
[[Category: Schlichting I]]
[[Category: Bluf]]
[[Category: Shoeman R-L]]
[[Category: Signal transduction]]
Retrieved from "https://proteopedia.org/2iyi"