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==Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.==
==Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.==
<StructureSection load='3fif' size='340' side='right' caption='[[3fif]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='3fif' size='340' side='right'caption='[[3fif]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3fif]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli] and [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FIF FirstGlance]. <br>
<table><tr><td colspan='2'>[[3fif]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FIF FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2jno|2jno]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ygdR, b2833, JW2801 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fif OCA], [https://pdbe.org/3fif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fif RCSB], [https://www.ebi.ac.uk/pdbsum/3fif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fif ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fif OCA], [http://pdbe.org/3fif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fif RCSB], [http://www.ebi.ac.uk/pdbsum/3fif PDBsum]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/YGDR_ECOLI YGDR_ECOLI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fif_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fif_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Ecoli]]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Acton, T B]]
[[Category: Escherichia coli K-12]]
[[Category: Baran, M]]
[[Category: Large Structures]]
[[Category: Chen, C X]]
[[Category: Acton TB]]
[[Category: Cunningham, K]]
[[Category: Baran M]]
[[Category: Hunt, J F]]
[[Category: Chen CX]]
[[Category: Jiang, M]]
[[Category: Cunningham K]]
[[Category: Kuzin, A P]]
[[Category: Hunt JF]]
[[Category: Liu, J C]]
[[Category: Jiang M]]
[[Category: Ma, L]]
[[Category: Kuzin AP]]
[[Category: Montelione, G T]]
[[Category: Liu JC]]
[[Category: Structural genomic]]
[[Category: Ma L]]
[[Category: Rossi, P]]
[[Category: Montelione GT]]
[[Category: Rost, B]]
[[Category: Rossi P]]
[[Category: Seetharaman, J]]
[[Category: Rost B]]
[[Category: Su, M]]
[[Category: Seetharaman J]]
[[Category: Swapna, G V.T]]
[[Category: Su M]]
[[Category: Tong, L]]
[[Category: Swapna GVT]]
[[Category: Xiao, R]]
[[Category: Tong L]]
[[Category: Cell membrane]]
[[Category: Xiao R]]
[[Category: Lipoprotein]]
[[Category: Membrane]]
[[Category: Palmitate]]
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]
[[Category: Ygdr ygdr_ecoli nesg x-ray structure]]

Latest revision as of 01:48, 21 November 2024

Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.

3fif, resolution 2.70Å

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