3i6y: Difference between revisions

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==Structure of an esterase from the oil-degrading bacterium Oleispira antarctica==
==Structure of an esterase from the oil-degrading bacterium Oleispira antarctica==
<StructureSection load='3i6y' size='340' side='right' caption='[[3i6y]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='3i6y' size='340' side='right'caption='[[3i6y]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3i6y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_14852 Dsm 14852]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I6Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I6Y FirstGlance]. <br>
<table><tr><td colspan='2'>[[3i6y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oleispira_antarctica Oleispira antarctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I6Y FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">olei01171 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=188908 DSM 14852])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i6y OCA], [https://pdbe.org/3i6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i6y RCSB], [https://www.ebi.ac.uk/pdbsum/3i6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i6y ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arylesterase Arylesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.2 3.1.1.2] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i6y OCA], [http://pdbe.org/3i6y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3i6y RCSB], [http://www.ebi.ac.uk/pdbsum/3i6y PDBsum]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/D0VWZ4_OLEAN D0VWZ4_OLEAN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/3i6y_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/3i6y_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Arylesterase]]
[[Category: Large Structures]]
[[Category: Dsm 14852]]
[[Category: Edwards, A M]]
[[Category: Evdokimova, E]]
[[Category: Joachimiak, A]]
[[Category: Kagan, O]]
[[Category: Structural genomic]]
[[Category: Savchenko, A]]
[[Category: Singer, A U]]
[[Category: Hydrolase]]
[[Category: Lipase]]
[[Category: Mcsg]]
[[Category: Oleispira antarctica]]
[[Category: Oleispira antarctica]]
[[Category: PSI, Protein structure initiative]]
[[Category: Edwards AM]]
[[Category: Evdokimova E]]
[[Category: Joachimiak A]]
[[Category: Kagan O]]
[[Category: Savchenko A]]
[[Category: Singer AU]]
Retrieved from "https://proteopedia.org/3i6y"