1e5q: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
==TERNARY COMPLEX OF SACCHAROPINE REDUCTASE FROM MAGNAPORTHE GRISEA, NADPH AND SACCHAROPINE==
 
<StructureSection load='1e5q' size='340' side='right' caption='[[1e5q]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
==Ternary complex of saccharopine reductase from Magnaporthe grisea, NADPH and saccharopine==
<StructureSection load='1e5q' size='340' side='right'caption='[[1e5q]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1e5q]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Crabgrass-specific_blast_fungus Crabgrass-specific blast fungus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E5Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1E5Q FirstGlance]. <br>
<table><tr><td colspan='2'>[[1e5q]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyricularia_grisea Pyricularia grisea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E5Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E5Q FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=SHR:N-(5-AMINO-5-CARBOXYPENTYL)GLUTAMIC+ACID'>SHR</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1e5l|1e5l]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=SHR:N-(5-AMINO-5-CARBOXYPENTYL)GLUTAMIC+ACID'>SHR</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LYS3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=148305 Crabgrass-specific blast fungus])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e5q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e5q OCA], [https://pdbe.org/1e5q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e5q RCSB], [https://www.ebi.ac.uk/pdbsum/1e5q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e5q ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Saccharopine_dehydrogenase_(NADP(+),_L-glutamate-forming) Saccharopine dehydrogenase (NADP(+), L-glutamate-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.10 1.5.1.10] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1e5q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e5q OCA], [http://pdbe.org/1e5q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1e5q RCSB], [http://www.ebi.ac.uk/pdbsum/1e5q PDBsum]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/LYS9_MAGO7 LYS9_MAGO7]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/1e5q_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/1e5q_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Crabgrass-specific blast fungus]]
[[Category: Large Structures]]
[[Category: Johansson, E]]
[[Category: Pyricularia grisea]]
[[Category: Lindqvist, Y]]
[[Category: Johansson E]]
[[Category: Schneider, G]]
[[Category: Lindqvist Y]]
[[Category: Steffens, J J]]
[[Category: Schneider G]]
[[Category: Alpha- aminoadipate pathway]]
[[Category: Steffens JJ]]
[[Category: Lysine biosynthesis]]
[[Category: Nadph]]
[[Category: Oxidoreductase]]
[[Category: Saccharopine reductase]]
Retrieved from "https://proteopedia.org/1e5q"