3dme: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141==
==Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141==
<StructureSection load='3dme' size='340' side='right' caption='[[3dme]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='3dme' size='340' side='right'caption='[[3dme]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3dme]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_tussis-convulsivae"_lehmann_and_neumann_1927 "bacterium tussis-convulsivae" lehmann and neumann 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DME OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DME FirstGlance]. <br>
<table><tr><td colspan='2'>[[3dme]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DME OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DME FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BP3253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=520 "Bacterium tussis-convulsivae" Lehmann and Neumann 1927])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dme OCA], [http://pdbe.org/3dme PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dme RCSB], [http://www.ebi.ac.uk/pdbsum/3dme PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dme OCA], [https://pdbe.org/3dme PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dme RCSB], [https://www.ebi.ac.uk/pdbsum/3dme PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dme ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q7VU70_BORPE Q7VU70_BORPE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dme_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dme_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
Line 19: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacterium tussis-convulsivae lehmann and neumann 1927]]
[[Category: Bordetella pertussis]]
[[Category: Abashidze, M]]
[[Category: Large Structures]]
[[Category: Acton, T B]]
[[Category: Abashidze M]]
[[Category: Everett, J K]]
[[Category: Acton TB]]
[[Category: Foote, E L]]
[[Category: Everett JK]]
[[Category: Hunt, J F]]
[[Category: Foote EL]]
[[Category: Janjua, H]]
[[Category: Hunt JF]]
[[Category: Liu, J]]
[[Category: Janjua H]]
[[Category: Montelione, G T]]
[[Category: Liu J]]
[[Category: Structural genomic]]
[[Category: Montelione GT]]
[[Category: Rost, B]]
[[Category: Rost B]]
[[Category: Seetharaman, J]]
[[Category: Seetharaman J]]
[[Category: Tong, L]]
[[Category: Tong L]]
[[Category: Wang, D]]
[[Category: Wang D]]
[[Category: Xiao, R]]
[[Category: Xiao R]]
[[Category: Conserved exported protein]]
[[Category: Nesg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]

Latest revision as of 09:42, 21 February 2024

Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141

3dme, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3dme&oldid=4064283"