2vvi: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
==IRISFP FLUORESCENT PROTEIN IN ITS GREEN FORM, TRANS CONFORMATION==
 
<StructureSection load='2vvi' size='340' side='right' caption='[[2vvi]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
==IrisFP fluorescent protein in its green form, trans conformation==
<StructureSection load='2vvi' size='340' side='right'caption='[[2vvi]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2vvi]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lobhe Lobhe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VVI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VVI FirstGlance]. <br>
<table><tr><td colspan='2'>[[2vvi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lobophyllia_hemprichii Lobophyllia hemprichii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VVI FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR8:2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE'>CR8</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7R0:2-[(4E)-2-[(1S)-1-azanyl-2-(1H-imidazol-4-yl)ethyl]-4-[(4-hydroxyphenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic+acid'>7R0</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2btj|2btj]], [[1zux|1zux]], [[2vvj|2vvj]], [[2vvh|2vvh]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vvi OCA], [https://pdbe.org/2vvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vvi RCSB], [https://www.ebi.ac.uk/pdbsum/2vvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vvi ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vvi OCA], [http://pdbe.org/2vvi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vvi RCSB], [http://www.ebi.ac.uk/pdbsum/2vvi PDBsum]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q5S6Z9_LOBHE Q5S6Z9_LOBHE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vv/2vvi_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vv/2vvi_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 31:


==See Also==
==See Also==
*[[Green Fluorescent Protein|Green Fluorescent Protein]]
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Lobhe]]
[[Category: Large Structures]]
[[Category: Adam, V]]
[[Category: Lobophyllia hemprichii]]
[[Category: Boehme, S]]
[[Category: Adam V]]
[[Category: Bourgeois, D]]
[[Category: Boehme S]]
[[Category: Desfonds, G]]
[[Category: Bourgeois D]]
[[Category: Field, M J]]
[[Category: Desfonds G]]
[[Category: Lelimousin, M]]
[[Category: Field MJ]]
[[Category: Mcsweeney, S]]
[[Category: Lelimousin M]]
[[Category: Nienhaus, G U]]
[[Category: McSweeney S]]
[[Category: Nienhaus, K]]
[[Category: Nienhaus GU]]
[[Category: Wiedenmann, J]]
[[Category: Nienhaus K]]
[[Category: Eosfp]]
[[Category: Wiedenmann J]]
[[Category: Fluorescent protein]]
[[Category: Microspectrophotometry]]
[[Category: Optical highlighter]]
[[Category: Photoactivation]]
[[Category: Photochromism]]
[[Category: Photoconversion]]
[[Category: Photoswitching]]
Retrieved from "https://proteopedia.org/2vvi"