5idd: Difference between revisions

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~~'''Unreleased structure'''~~

~~The~~ entry 5idd ~~is ON HOLD~~

==Comment on S. W. M. Tanley and J. R. Helliwell Structural dynamics of cisplatin binding to histidine in a protein Struct. Dyn. 1, 034701 (2014) regarding the refinement of 4mwk, 4mwm, 4mwn and 4oxe and the method we have adopted.==

== Structural highlights ==

<table><tr><td colspan='2'>[[5idd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4oxe 4oxe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IDD OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=5IDD FirstGlance].

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.13Å</td></tr>

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=5idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5idd OCA], [https://pdbe.org/5idd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5idd RCSB], [https://www.ebi.ac.uk/pdbsum/5idd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5idd ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>

~~Authors: Tanley, S.W.M., Helliwell, J.R.~~

==See Also==

*[[Lysozyme 3D structures|Lysozyme 3D structures]]

~~Description~~:

== References ==

[[Category: ~~Unreleased~~ Structures]]

[[Category: Helliwell~~, J.R~~]]

__TOC__

[[Category: Tanley~~, S.W.M~~]]

</StructureSection>

[[Category: Gallus gallus]]

[[Category: Large Structures]]

[[Category: Helliwell JR]]

[[Category: Tanley SWM]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 5idd is ON HOLD
+==Comment on S. W. M. Tanley and J. R. Helliwell Structural dynamics of cisplatin binding to histidine in a protein Struct. Dyn. 1, 034701 (2014) regarding the refinement of 4mwk, 4mwm, 4mwn and 4oxe and the method we have adopted.==
+<StructureSection load='5idd' size='340' side='right'caption='[[5idd]], [[Resolution|resolution]] 1.13&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5idd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4oxe 4oxe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IDD FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.13&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5idd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5idd OCA], [https://pdbe.org/5idd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5idd RCSB], [https://www.ebi.ac.uk/pdbsum/5idd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5idd ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
-Authors: Tanley, S.W.M., Helliwell, J.R.
+==See Also==
+*[[Lysozyme 3D structures|Lysozyme 3D structures]]
-Description:
+== References ==
-[[Category: Unreleased Structures]]
+<references/>
-[[Category: Helliwell, J.R]]
+__TOC__
-[[Category: Tanley, S.W.M]]
+</StructureSection>
+[[Category: Gallus gallus]]
+[[Category: Large Structures]]
+[[Category: Helliwell JR]]
+[[Category: Tanley SWM]]