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==Introduction==
==Introduction==
[[Image:Surface_Protein_red.png |300 px|below|thumb|'''Figure 1'''.Top view of NTSR1 protein (blue) interacting with NTS ligand (red)]]
[[Image:Surface_Protein_red.png |300 px|below|thumb|'''Figure 1'''.Top view of NTSR1 protein (blue) interacting with its ligand, NTS(red).]]
Neurotensin receptor 1 (NTSR1) is a '''[https://en.wikipedia.org/wiki/G_protein%E2%80%93coupled_receptor G-protein coupled receptor (GPCR).]''' GPCRs are a class of proteins with an extracellular binding domain and 7 transmembrane helices that assist in propagating a cellular response<ref name="SPGP"/>. This is accomplished by the binding of ligands to the GPCR outside the cell, causing a '''[https://en.wikipedia.org/wiki/Conformational_change conformational change]''' and activating a '''[https://en.wikipedia.org/wiki/Signal_transduction signal transduction]''' pathway via '''[https://en.wikipedia.org/wiki/Second_messenger_system second messengers]''' such as '''[https://en.wikipedia.org/wiki/Cyclic_adenosine_monophosphate  cyclic AMP]''', '''[https://en.wikipedia.org/wiki/Inositol_trisphosphate  inositol triphosphate]''', and '''[https://en.wikipedia.org/wiki/Diglyceride  diacylglycerol]'''.<ref name="SPGP"/> The ligand for NTSR1 is the 13 amino acid peptide, neurotensin (NTS)<ref name="SONT">PMID:23051748</ref>, and the majority of the effects of NTS are mediated through NTSR1<ref name="SONT"/>. NTS has a variety of biological activities including a role in the '''[https://en.wikipedia.org/wiki/Leptin leptin]''' signaling pathways <ref name="Mice">PMID: 20211191</ref>, tumor growth <ref name="cancer">PMID:16887236</ref>, and '''[https://en.wikipedia.org/wiki/Dopamine dopamine]''' regulation <ref name="Schizophrenia">PMID:22596253</ref>. Recently NTSR1 was crystallized bound with the C-terminus of its tridecapeptide '''[https://en.wikipedia.org/wiki/Ligand ligand]''', <scene name='72/721548/Neurotensin/7'>NTS(8-13)</scene>. The shortened ligand was used because it has a higher potency and efficacy than its full-length counterpart<ref name="SONT"/>. Class A GPCRs bind their ligands within the '''[https://en.wikipedia.org/wiki/Transmembrane_protein transmembrane]''' core in a ligand binding pocket. The <scene name='72/721547/Hydrophobic_binding_pocket/5'>hydrophobic binding pocket</scene> in NTSR1 is located at the top of the protein (Figure 1). NTSR1 also contains an '''[https://en.wikipedia.org/wiki/Allosteric_regulation allosteric]''' <scene name='72/721548/Na_bind_pocket/13'>sodium binding pocket</scene>, which is located directly beneath the ligand binding pocket and the two pockets are separated by the residue <scene name='72/721548/Trp321/1'>Trp321</scene><ref name="SPGP">PMID:26205105</ref>. NTSR1 has been mutated to exist in both <scene name='72/721548/Ntsr1-elf/6'>active</scene> and <scene name='72/721547/Ntsr1-gw5/8'>active-like</scene> states. This has led to a greater understanding of the structure of NTSR1 and how the structure influences its function.
Neurotensin receptor 1 (NTSR1) is a '''[https://en.wikipedia.org/wiki/G_protein%E2%80%93coupled_receptor G-protein coupled receptor (GPCR).]''' GPCRs are a class of proteins with an extracellular binding domain and 7 transmembrane helices that assist in propagating a cellular response<ref name="SPGP"/>. This is accomplished by the binding of ligands to the GPCR outside the cell, causing a '''[https://en.wikipedia.org/wiki/Conformational_change conformational change]''' and activating a '''[https://en.wikipedia.org/wiki/Signal_transduction signal transduction]''' pathway via '''[https://en.wikipedia.org/wiki/Second_messenger_system second messengers]''' such as '''[https://en.wikipedia.org/wiki/Cyclic_adenosine_monophosphate  cyclic AMP]''', '''[https://en.wikipedia.org/wiki/Inositol_trisphosphate  inositol triphosphate]''', and '''[https://en.wikipedia.org/wiki/Diglyceride  diacylglycerol]'''.<ref name="SPGP"/> The ligand for NTSR1 is the 13 amino acid peptide, neurotensin (NTS)<ref name="SONT">PMID:23051748</ref>, and the majority of the effects of NTS are mediated through NTSR1<ref name="SONT"/>. NTS has a variety of biological activities including a role in the '''[https://en.wikipedia.org/wiki/Leptin leptin]''' signaling pathways <ref name="Mice">PMID: 20211191</ref>, tumor growth <ref name="cancer">PMID:16887236</ref>, and '''[https://en.wikipedia.org/wiki/Dopamine dopamine]''' regulation <ref name="Schizophrenia">PMID:22596253</ref>. Recently NTSR1 was crystallized bound with the C-terminus of its tridecapeptide '''[https://en.wikipedia.org/wiki/Ligand ligand]''', <scene name='72/721548/Neurotensin/7'>NTS(8-13)</scene>. The shortened ligand was used because it has a higher potency and efficacy than its full-length counterpart<ref name="SONT"/>. Class A GPCRs bind their ligands within the '''[https://en.wikipedia.org/wiki/Transmembrane_protein transmembrane]''' core in a ligand binding pocket. The <scene name='72/721547/Hydrophobic_binding_pocket/6'>hydrophobic binding pocket</scene> in NTSR1 is located at the top of the protein (Figure 1). NTSR1 also contains an '''[https://en.wikipedia.org/wiki/Allosteric_regulation allosteric]''' <scene name='72/721548/Na_bind_pocket/13'>sodium binding pocket</scene>, which is located directly beneath the ligand binding pocket and the two pockets are separated by the residue <scene name='72/721548/Trp321/1'>Trp321</scene><ref name="SPGP">PMID:26205105</ref>. NTSR1 has been mutated to exist in both <scene name='72/721548/Ntsr1-elf/6'>active</scene> and <scene name='72/721547/Ntsr1-gw5/8'>active-like</scene> states. This has led to a greater understanding of the structure of NTSR1 and how the structure influences its function.
   
   
== Structure ==
== Structure ==
===Ligand Binding Pocket===  
===Ligand Binding Pocket===  
On the extracellular side of the protein is the
On the extracellular side of the protein is the
<scene name='72/721547/Hydrophobic_binding_pocket/5'>hydrophobic binding pocket</scene>. <ref name="SONT"/>
<scene name='72/721547/Hydrophobic_binding_pocket/6'>hydrophobic binding pocket</scene>. <ref name="SONT"/>
One key residue in this pocket is a Phenylalanine at position 358, which takes part in a network of hydrophobic stacking interactions<ref name="SPGP"/>. These interactions stabilize the Trp321 and Tyr324 residues allowing <scene name='72/721547/Ligand_protein_interactions/8'>Tyr324</scene> to interact with the '''[https://en.wikipedia.org/wiki/C-terminus C-terminal]'''  
One key residue in this pocket is a Phenylalanine at position 358, which takes part in a network of hydrophobic stacking interactions<ref name="SPGP"/>. These interactions stabilize the Trp321 and Tyr324 residues allowing Tyr324 to interact with the '''[https://en.wikipedia.org/wiki/C-terminus C-terminal]'''  
<scene name='72/721547/Hydrophobic_binding_pocket/6'>Leu13 residue of the NTS ligand</scene>
<scene name='72/721547/Ligand_protein_interactions/8'>Leu13 residue of NTS ligand</scene>
via '''[https://en.wikipedia.org/wiki/Van_der_Waals_force Van der Waals interactions]''' .<ref name="SONT"/><ref name="SPGP"/>
via '''[https://en.wikipedia.org/wiki/Van_der_Waals_force Van der Waals interactions]''' .<ref name="SONT"/><ref name="SPGP"/>
Without the hydrophobic stacking interactions that are facilitated by the Phe358, this binding interaction would be destabilized. Trp321 also participates in these stacking interactions and serves as the boundary between the ligand binding pocket and the Na<sup>+</sup> binding pocket.<ref name="SPGP"/>  
Without the hydrophobic stacking interactions that are facilitated by the Phe358, this binding interaction would be destabilized. Trp321 also participates in these stacking interactions and serves as the boundary between the ligand binding pocket and the Na<sup>+</sup> binding pocket.<ref name="SPGP"/>  
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====Phe358====
====Phe358====
When this residue was mutated to an alanine <ref name="SPGP"/> the <scene name='72/721547/Hydrophobic_binding_pocket/5'>hydrophobic stacking interactions</scene> of the ligand binding pocket were interrupted,resulting in a lack of G-Protein activity in NTSR1.<ref name="SPGP"/>.This supported the role of Phe358 as stated in the hydrophobic binding pocket section of this page.   
When this residue was mutated to an alanine <ref name="SPGP"/> the <scene name='72/721547/Hydrophobic_binding_pocket/6'>hydrophobic stacking interactions</scene> of the ligand binding pocket were interrupted,resulting in a lack of G-Protein activity in NTSR1.<ref name="SPGP"/>.This supported the role of Phe358 as stated in the hydrophobic binding pocket section of this page.   


====Glu166====
====Glu166====

Latest revision as of 04:52, 22 April 2016

An interactive view of the class A GPCR, NTSR1 (blue). This protein gets its activity from binding to the 13 amino acid ligand, NTS (red).

Drag the structure with the mouse to rotate

References