1hkd: Difference between revisions

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[[Image:1hkd.gif|left|200px]]


{{Structure
==Structure of pea lectin in complex with alpha-methyl-D-glucopyranoside==
|PDB= 1hkd |SIZE=350|CAPTION= <scene name='initialview01'>1hkd</scene>, resolution 2.09&Aring;
<StructureSection load='1hkd' size='340' side='right'caption='[[1hkd]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Gyp+Binding+Site+For+Chain+C'>AC1</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GYP:METHYL-ALPHA-D-GLUCOPYRANOSIDE'>GYP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>
<table><tr><td colspan='2'>[[1hkd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HKD FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GYP:METHYL-ALPHA-D-GLUCOPYRANOSIDE'>GYP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hkd OCA], [https://pdbe.org/1hkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hkd RCSB], [https://www.ebi.ac.uk/pdbsum/1hkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hkd ProSAT]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hkd OCA], [http://www.ebi.ac.uk/pdbsum/1hkd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1hkd RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/LEC_PEA LEC_PEA] D-mannose specific lectin.
 
== Evolutionary Conservation ==
'''STRUCTURE OF PEA LECTIN IN COMPLEX WITH ALPHA-METHYL-D-GLUCOPYRANOSIDE'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hk/1hkd_consurf.spt"</scriptWhenChecked>
1HKD is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HKD OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hkd ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pisum sativum]]
[[Category: Pisum sativum]]
[[Category: Protein complex]]
[[Category: Shevtsov MB]]
[[Category: Shevtsov, M B.]]
[[Category: Tsygannik IN]]
[[Category: Tsygannik, I N.]]
[[Category: carbohydrate binding protein,calcium]]
[[Category: glycoprotein]]
[[Category: plant lectin]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:06:39 2008''

Latest revision as of 12:27, 13 December 2023

Structure of pea lectin in complex with alpha-methyl-D-glucopyranoside

1hkd, resolution 2.09Å

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