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==ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESM-state at reaction time of 3 min==
==ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESM-state at reaction time of 3 min==
<StructureSection load='3x0m' size='340' side='right' caption='[[3x0m]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
<StructureSection load='3x0m' size='340' side='right'caption='[[3x0m]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3x0m]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3X0M FirstGlance]. <br>
<table><tr><td colspan='2'>[[3x0m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X0M FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3x0i|3x0i]], [[3x0j|3x0j]], [[3x0k|3x0k]], [[3x0l|3x0l]], [[3x0n|3x0n]], [[3x0o|3x0o]], [[3x0p|3x0p]], [[3x0q|3x0q]], [[3x0r|3x0r]], [[3xrs|3xrs]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/ADP-ribose_diphosphatase ADP-ribose diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.13 3.6.1.13] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0m OCA], [https://pdbe.org/3x0m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x0m RCSB], [https://www.ebi.ac.uk/pdbsum/3x0m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0m ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3x0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0m OCA], [http://pdbe.org/3x0m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3x0m RCSB], [http://www.ebi.ac.uk/pdbsum/3x0m PDBsum]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q5SKW5_THET8 Q5SKW5_THET8]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 3x0m" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3x0m" style="background-color:#fffaf0;"></div>
==See Also==
*[[ADP-ribose pyrophosphatase 3D structures|ADP-ribose pyrophosphatase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: ADP-ribose diphosphatase]]
[[Category: Large Structures]]
[[Category: Akita, Y]]
[[Category: Thermus thermophilus HB8]]
[[Category: Furuike, Y]]
[[Category: Akita Y]]
[[Category: Kamiya, N]]
[[Category: Furuike Y]]
[[Category: Miyahara, I]]
[[Category: Kamiya N]]
[[Category: Adp ribose]]
[[Category: Miyahara I]]
[[Category: Adp ribose hydrolase]]
[[Category: Cytosol]]
[[Category: Hydrolase]]
[[Category: Nudix motif]]