5g33: Difference between revisions
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New page: '''Unreleased structure''' The entry 5g33 is ON HOLD until Paper Publication Authors: Simon, N., Ebert, C., Schneider, S. Description: Structure of Rad14 in complex with acetylnaphtyl-... |
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==Structure of Rad14 in complex with acetylnaphtyl-guanine containing DNA== | |||
<StructureSection load='5g33' size='340' side='right'caption='[[5g33]], [[Resolution|resolution]] 2.40Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[5g33]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5G33 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MFO:[(2~{R},3~{S},5~{R})-5-[2-AZANYL-8-[ETHANOYL(NAPHTHALEN-2-YL)AMINO]-6-OXIDANYLIDENE-3~{H}-PURIN-9-YL]-3-OXIDANYL-OXOLAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>MFO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5g33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g33 OCA], [https://pdbe.org/5g33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5g33 RCSB], [https://www.ebi.ac.uk/pdbsum/5g33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5g33 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/RAD14_YEAST RAD14_YEAST] Involved in nucleotide excision repair. Binds specifically to damaged DNA. Required for the incision step. | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Heterocyclic aromatic amines react with purine bases and result in bulky DNA adducts which cause mutations. Such structurally diverse lesions are substrates for the nucleotide excision repair (NER). It is thought that the NER machinery recognises distorted DNA conformations, involving the xeroderma pigmentosum group A and C (XPA, XPC) proteins as a scaffold between the DNA substrate and several other NER proteins. Here we present the synthesis of DNA containing the polycyclic aromatic amine C8-guanine lesions acetylaminophenyl, acetylaminonaphthyl, acetylaminoanthryl and acetylaminopyrenyl as well as their crystal structures in in complex with the yeast XPA homologue Rad14. This work further substantiates the indirect lesion detection mechanism employed by the NER system to recognise destabilised and deformable DNA structures. | |||
Structural basis for bulky adduct DNA lesion recognition by the nucleotide excision repair protein Rad14.,Schneider S, Simon N, Ebert C Chemistry. 2016 May 25. doi: 10.1002/chem.201602438. PMID:27223336<ref>PMID:27223336</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 5g33" style="background-color:#fffaf0;"></div> | ||
[[Category: | == References == | ||
[[Category: Ebert | <references/> | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Saccharomyces cerevisiae]] | |||
[[Category: Synthetic construct]] | |||
[[Category: Ebert C]] | |||
[[Category: Schneider S]] | |||
[[Category: Simon N]] | |||
Latest revision as of 13:37, 26 July 2023
Structure of Rad14 in complex with acetylnaphtyl-guanine containing DNA
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