5fw4: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,609 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,609 edits
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:


==Structure of Thermobifida fusca DyP-type Peroxidase and Activity towards Kraft Lignin and Lignin Model Compounds==
==Structure of Thermobifida fusca DyP-type Peroxidase and Activity towards Kraft Lignin and Lignin Model Compounds==
<StructureSection load='5fw4' size='340' side='right' caption='[[5fw4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='5fw4' size='340' side='right'caption='[[5fw4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5fw4]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FW4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FW4 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5fw4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermobifida_fusca_YX Thermobifida fusca YX]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FW4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FW4 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dye_decolorizing_peroxidase Dye decolorizing peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.19 1.11.1.19] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fw4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fw4 OCA], [http://pdbe.org/5fw4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fw4 RCSB], [http://www.ebi.ac.uk/pdbsum/5fw4 PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fw4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fw4 OCA], [https://pdbe.org/5fw4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fw4 RCSB], [https://www.ebi.ac.uk/pdbsum/5fw4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fw4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/DYP_THEFY DYP_THEFY]] Peroxidase that is able to convert a large number of compounds, but its physiological substrate is not known. Shows high reactivity towards anthraquinone dyes (e.g. Reactive Blue 19) and a modest activity towards standard peroxidase substrates (such as guaiacol and 2,6-dimethoxyphenol) and azo dyes (e.g. Reactive Blue 5). Is also able to oxidize aromatic sulfides enantioselectively, resulting in the corresponding (R)-sulfoxides, but with a poor efficiency. Does not display catalase activity.<ref>PMID:19967355</ref>
[https://www.uniprot.org/uniprot/DYP_THEFY DYP_THEFY] Peroxidase that is able to convert a large number of compounds, but its physiological substrate is not known. Shows high reactivity towards anthraquinone dyes (e.g. Reactive Blue 19) and a modest activity towards standard peroxidase substrates (such as guaiacol and 2,6-dimethoxyphenol) and azo dyes (e.g. Reactive Blue 5). Is also able to oxidize aromatic sulfides enantioselectively, resulting in the corresponding (R)-sulfoxides, but with a poor efficiency. Does not display catalase activity.<ref>PMID:19967355</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Dye decolorizing peroxidase]]
[[Category: Large Structures]]
[[Category: Bugg, T D.H]]
[[Category: Thermobifida fusca YX]]
[[Category: Fulop, V]]
[[Category: Bugg TDH]]
[[Category: Jamshidi, S]]
[[Category: Fulop V]]
[[Category: Rahmanpour, R]]
[[Category: Jamshidi S]]
[[Category: Rea, D]]
[[Category: Rahmanpour R]]
[[Category: Decolorizing peroxidase]]
[[Category: Rea D]]
[[Category: Dyp]]
[[Category: Lignin oxidation]]
[[Category: Oxidoreductase]]
Retrieved from "https://proteopedia.org/5fw4"