5l7v: Difference between revisions

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New page: '''Unreleased structure''' The entry 5l7v is ON HOLD Authors: Description: Category: Unreleased Structures
 
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'''Unreleased structure'''


The entry 5l7v is ON HOLD
==Crystal Structure of BvGH123 with bond transition state analog Galthiazoline.==
<StructureSection load='5l7v' size='340' side='right'caption='[[5l7v]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5l7v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phocaeicola_vulgatus_ATCC_8482 Phocaeicola vulgatus ATCC 8482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5L7V FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNL:(3AR,5R,6R,7R,7AR)-5-(HYDROXYMETHYL)-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL'>GNL</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5l7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l7v OCA], [https://pdbe.org/5l7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5l7v RCSB], [https://www.ebi.ac.uk/pdbsum/5l7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5l7v ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A6L2E5_PHOV8 A6L2E5_PHOV8]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Bacteroides vulgatus is a member of the human microbiota whose abundance is increased in patients with Crohn's disease. We show that a B. vulgatus glycoside hydrolase from the carbohydrate active enzyme family GH123, BvGH123, is an N-acetyl-beta-galactosaminidase that acts with retention of stereochemistry, and, through a 3-D structure in complex with Gal-thiazoline, provide evidence in support of a neighbouring group participation mechanism.


Authors:  
Structural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation.,Roth C, Petricevic M, John A, Goddard-Borger ED, Davies GJ, Williams SJ Chem Commun (Camb). 2016 Sep 25;52(74):11096-9. doi: 10.1039/c6cc04649e. Epub, 2016 Aug 22. PMID:27546776<ref>PMID:27546776</ref>


Description:  
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
<div class="pdbe-citations 5l7v" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Phocaeicola vulgatus ATCC 8482]]
[[Category: Davies GJ]]
[[Category: Goddard-Borger ED]]
[[Category: John A]]
[[Category: Petricevic M]]
[[Category: Roth C]]
[[Category: Williams SJ]]
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