3q09: Difference between revisions

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{{Large structure}}
 
==Crystal Structure of Chlorite Dismutase from D. Aromatica at pH 9.0==
==Crystal Structure of Chlorite Dismutase from D. Aromatica at pH 9.0==
<StructureSection load='3q09' size='340' side='right' caption='[[3q09]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='3q09' size='340' side='right'caption='[[3q09]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3q09]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Decar Decar]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3m2s 3m2s]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q09 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3Q09 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3q09]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Dechloromonas_aromatica_RCB Dechloromonas aromatica RCB]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q09 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q09 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3q08|3q08]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Daro_2580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=159087 DECAR])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q09 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q09 OCA], [https://pdbe.org/3q09 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q09 RCSB], [https://www.ebi.ac.uk/pdbsum/3q09 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q09 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Chlorite_O(2)-lyase Chlorite O(2)-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.49 1.13.11.49] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3q09 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q09 OCA], [http://pdbe.org/3q09 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3q09 RCSB], [http://www.ebi.ac.uk/pdbsum/3q09 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3q09 ProSAT]</span></td></tr>
</table>
</table>
{{Large structure}}
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/CLD_DECAR CLD_DECAR]] Catalyzes the heme-dependent decomposition of chlorite to O(2) and chloride with high efficiency and specificity. Used to detoxify chlorite, a by-product of the reduction of perchlorate, a primarily anthropogenic pollutant, in perchlorate-respiring bacteria.<ref>PMID:18422344</ref>
[https://www.uniprot.org/uniprot/CLD_DECAR CLD_DECAR] Catalyzes the heme-dependent decomposition of chlorite to O(2) and chloride with high efficiency and specificity. Used to detoxify chlorite, a by-product of the reduction of perchlorate, a primarily anthropogenic pollutant, in perchlorate-respiring bacteria.<ref>PMID:18422344</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Decar]]
[[Category: Dechloromonas aromatica RCB]]
[[Category: Goblirsch, B R]]
[[Category: Large Structures]]
[[Category: Wilmot, C M]]
[[Category: Goblirsch BR]]
[[Category: Chlorite decomposition]]
[[Category: Wilmot CM]]
[[Category: Ferrodoxin fold]]
[[Category: O2 generation]]
[[Category: Oxidoreductase]]
[[Category: Periplasim]]
Retrieved from "https://proteopedia.org/3q09"