3utn: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:


==Crystal structure of Tum1 protein from Saccharomyces cerevisiae==
==Crystal structure of Tum1 protein from Saccharomyces cerevisiae==
<StructureSection load='3utn' size='340' side='right' caption='[[3utn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='3utn' size='340' side='right'caption='[[3utn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3utn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3UTN FirstGlance]. <br>
<table><tr><td colspan='2'>[[3utn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UTN FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TUM1, YOR251C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thiosulfate_sulfurtransferase Thiosulfate sulfurtransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.1.1 2.8.1.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3utn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3utn OCA], [https://pdbe.org/3utn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3utn RCSB], [https://www.ebi.ac.uk/pdbsum/3utn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3utn ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3utn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3utn OCA], [http://pdbe.org/3utn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3utn RCSB], [http://www.ebi.ac.uk/pdbsum/3utn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3utn ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/THTR_YEAST THTR_YEAST]] Required for formation of the 2-thio group of the 5-methoxycarbonylmethyl-2-thiouridine modified base in some tRNAs.<ref>PMID:18755837</ref>
[https://www.uniprot.org/uniprot/THTR_YEAST THTR_YEAST] Required for formation of the 2-thio group of the 5-methoxycarbonylmethyl-2-thiouridine modified base in some tRNAs.<ref>PMID:18755837</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Baker's yeast]]
[[Category: Large Structures]]
[[Category: Thiosulfate sulfurtransferase]]
[[Category: Saccharomyces cerevisiae S288C]]
[[Category: Gong, W]]
[[Category: Gong W]]
[[Category: Ji, C]]
[[Category: Ji C]]
[[Category: Liu, M]]
[[Category: Liu M]]
[[Category: Qiu, R]]
[[Category: Qiu R]]
[[Category: Wang, F]]
[[Category: Wang F]]
[[Category: Rhodanese-like domain]]
[[Category: Sulfurtransferase]]
[[Category: Transferase]]