3ezk: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:


==Bacteriophage T4 gp17 motor assembly based on crystal structures and cryo-EM reconstructions==
==Bacteriophage T4 gp17 motor assembly based on crystal structures and cryo-EM reconstructions==
<StructureSection load='3ezk' size='340' side='right' caption='[[3ezk]], [[Resolution|resolution]] 34.00&Aring;' scene=''>
<SX load='3ezk' size='340' side='right' viewer='molstar' caption='[[3ezk]], [[Resolution|resolution]] 34.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3ezk]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EZK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EZK FirstGlance]. <br>
<table><tr><td colspan='2'>[[3ezk]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EZK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EZK FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3cpe|3cpe]]</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 34&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">17 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ezk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ezk OCA], [https://pdbe.org/3ezk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ezk RCSB], [https://www.ebi.ac.uk/pdbsum/3ezk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ezk ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ezk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ezk OCA], [http://pdbe.org/3ezk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ezk RCSB], [http://www.ebi.ac.uk/pdbsum/3ezk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ezk ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/TERL_BPT4 TERL_BPT4]] Component of the molecular motor that translocates genomic DNA in empty capsid during DNA packaging. Heterodimerizes with small terminase protein to be docked on capsid portal protein. The latter forms a ring in which genomic DNA in translocated into the capsid. May have or induce an endonuclease activity to cleave the genome concatemer after encapsidation (By similarity).  
[https://www.uniprot.org/uniprot/TERL_BPT4 TERL_BPT4] Component of the molecular motor that translocates genomic DNA in empty capsid during DNA packaging. Heterodimerizes with small terminase protein to be docked on capsid portal protein. The latter forms a ring in which genomic DNA in translocated into the capsid. May have or induce an endonuclease activity to cleave the genome concatemer after encapsidation (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ez/3ezk_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ez/3ezk_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 31:
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</SX>
[[Category: Bpt4]]
[[Category: Escherichia virus T4]]
[[Category: Rossmann, M G]]
[[Category: Large Structures]]
[[Category: Sun, S]]
[[Category: Rossmann MG]]
[[Category: Alternative initiation]]
[[Category: Sun S]]
[[Category: Atp-binding]]
[[Category: Dna packaging]]
[[Category: Dna-binding]]
[[Category: Hydrolase]]
[[Category: Nuclease]]
[[Category: Nucleotide-binding]]
[[Category: Pentameric motor]]
Retrieved from "https://proteopedia.org/3ezk"