1nij: Difference between revisions

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[[Image:1nij.jpg|left|200px]]


{{Structure
==YJIA PROTEIN==
|PDB= 1nij |SIZE=350|CAPTION= <scene name='initialview01'>1nij</scene>, resolution 2.00&Aring;
<StructureSection load='1nij' size='340' side='right'caption='[[1nij]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[1nij]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NIJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NIJ FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
|GENE= YJIA OR B4352 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nij OCA], [https://pdbe.org/1nij PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nij RCSB], [https://www.ebi.ac.uk/pdbsum/1nij PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nij ProSAT]</span></td></tr>
|DOMAIN=
</table>
|RELATEDENTRY=[[1la9|1LA9]]
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nij FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nij OCA], [http://www.ebi.ac.uk/pdbsum/1nij PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nij RCSB]</span>
[https://www.uniprot.org/uniprot/YJIA_ECOLI YJIA_ECOLI] Binds GTP. May function as GTP-dependent regulator.
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''YJIA PROTEIN'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ni/1nij_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
1NIJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NIJ OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==Reference==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nij ConSurf].
Crystal structure of the Escherichia coli YjiA protein suggests a GTP-dependent regulatory function., Khil PP, Obmolova G, Teplyakov A, Howard AJ, Gilliland GL, Camerini-Otero RD, Proteins. 2004 Feb 1;54(2):371-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14696199 14696199]
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Camerini-Otero, R D.]]
[[Category: Camerini-Otero RD]]
[[Category: Gilliland, G L.]]
[[Category: Gilliland GL]]
[[Category: Howard, A J.]]
[[Category: Howard AJ]]
[[Category: Khil, P P.]]
[[Category: Khil PP]]
[[Category: Obmolova, G.]]
[[Category: Obmolova G]]
[[Category: S2F, Structure 2.Function Project.]]
[[Category: Teplyakov A]]
[[Category: Teplyakov, A.]]
[[Category: gtp binding]]
[[Category: p-loop protein]]
[[Category: s2f]]
[[Category: structural genomic]]
[[Category: structure 2 function project]]
 
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Retrieved from "https://proteopedia.org/1nij"