1nmn: Difference between revisions

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[[Image:1nmn.jpg|left|200px]]


{{Structure
==Structure of yqgF from Escherichia coli, a hypothetical protein==
|PDB= 1nmn |SIZE=350|CAPTION= <scene name='initialview01'>1nmn</scene>, resolution 2.3&Aring;
<StructureSection load='1nmn' size='340' side='right'caption='[[1nmn]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[1nmn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NMN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NMN FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
|GENE= YQGF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nmn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nmn OCA], [https://pdbe.org/1nmn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nmn RCSB], [https://www.ebi.ac.uk/pdbsum/1nmn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nmn ProSAT]</span></td></tr>
|DOMAIN=
</table>
|RELATEDENTRY=
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nmn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nmn OCA], [http://www.ebi.ac.uk/pdbsum/1nmn PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1nmn RCSB]</span>
[https://www.uniprot.org/uniprot/YQGF_ECOLI YQGF_ECOLI] Involved in the processing of the 5'-end of pre-16S rRNA during 70S ribosome maturation (processing does not occur on total cellular RNA off the ribosome); may be a nuclease (PubMed:25545592). A temperature-sensitive yqgF mutant no longer grows when Rho or NusA are overproduced, and has reduced transcription of genes encoded downstream of Rho terminators; transcription increases again in the presence of the Rho inhibitor bicylomycin (PubMed:22353788).<ref>PMID:22353788</ref> <ref>PMID:25545592</ref>
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''Structure of yqgF from Escherichia coli, a hypothetical protein'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nm/1nmn_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
1NMN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NMN OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nmn ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Galkin, A.]]
[[Category: Galkin A]]
[[Category: Herzberg, O.]]
[[Category: Herzberg O]]
[[Category: Howard, A.]]
[[Category: Howard A]]
[[Category: Krajewski, W.]]
[[Category: Krajewski W]]
[[Category: S2F, Structure 2.Function Project.]]
[[Category: Sarikaya E]]
[[Category: Sarikaya, E.]]
[[Category: hypothetical protein]]
[[Category: s2f]]
[[Category: structural genomic]]
[[Category: structure 2 function project]]
[[Category: yqgf]]
 
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Retrieved from "https://proteopedia.org/1nmn"