5lpg: Difference between revisions
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==Structure of NUDT15 in complex with 6-thio-GMP== | ==Structure of NUDT15 in complex with 6-thio-GMP== | ||
<StructureSection load='5lpg' size='340' side='right' caption='[[5lpg]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='5lpg' size='340' side='right'caption='[[5lpg]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5lpg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LPG OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[5lpg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LPG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LPG FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=71V:[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-SULFANYL-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>71V</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=71V:[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-SULFANYL-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>71V</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lpg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lpg OCA], [https://pdbe.org/5lpg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lpg RCSB], [https://www.ebi.ac.uk/pdbsum/5lpg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lpg ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/NUD15_HUMAN NUD15_HUMAN] Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can degrade 8-oxo-dGTP in vitro, suggesting that it may remove an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool, thereby preventing misincorporation of 8-oxo-dGTP into DNA thus preventing A:T to C:G transversions. Its substrate specificity in vivo however remains unclear (By similarity). May have a role in DNA synthesis and cell cycle progression through the interaction with PCNA.<ref>PMID:19419956</ref> <ref>PMID:22556419</ref> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Homo sapiens]] | ||
[[Category: Bevc | [[Category: Large Structures]] | ||
[[Category: Carter | [[Category: Bevc L]] | ||
[[Category: Hagenkort | [[Category: Carter M]] | ||
[[Category: Helleday | [[Category: Hagenkort A]] | ||
[[Category: Herr | [[Category: Helleday T]] | ||
[[Category: Homan | [[Category: Herr P]] | ||
[[Category: Jemth | [[Category: Homan E]] | ||
[[Category: Masuyer | [[Category: Jemth A-S]] | ||
[[Category: Page | [[Category: Masuyer G]] | ||
[[Category: Rehling | [[Category: Page BDG]] | ||
[[Category: Stenmark | [[Category: Rehling D]] | ||
[[Category: Valerie | [[Category: Stenmark P]] | ||
[[Category: Valerie NCK]] | |||
Latest revision as of 18:40, 18 October 2023
Structure of NUDT15 in complex with 6-thio-GMP
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