5ljf: Difference between revisions

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'''Unreleased structure'''


The entry 5ljf is ON HOLD  until Paper Publication
==Crystal structure of the endo-1,4-glucanase RBcel1 E135A with cellotriose==
<StructureSection load='5ljf' size='340' side='right'caption='[[5ljf]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5ljf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Uncultured_bacterium Uncultured bacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LJF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LJF FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.734396&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=PRD_900021:beta-cellotriose'>PRD_900021</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ljf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ljf OCA], [https://pdbe.org/5ljf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ljf RCSB], [https://www.ebi.ac.uk/pdbsum/5ljf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ljf ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/C1JI15_9BACT C1JI15_9BACT]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The ability of retaining glycoside hydrolases (GHs) to transglycosylate is inherent to the double-displacement mechanism. Studying reaction intermediates, such as the glycosyl-enzyme intermediate (GEI) and the Michaelis complex, could provide valuable information to better understand the molecular factors governing the catalytic mechanism. Here, the GEI structure of RBcel1, an endo-1,4-beta-glucanase of the GH5 family endowed with transglycosylase activity, is reported. It is the first structure of a GH5 enzyme covalently bound to a natural oligosaccharide with the two catalytic glutamate residues present. The structure of the variant RBcel1_E135A in complex with cellotriose is also reported, allowing a description of the entire binding cleft of RBcel1. Taken together, the structures deliver different snapshots of the double-displacement mechanism. The structural analysis revealed a significant movement of the nucleophilic glutamate residue during the reaction. Enzymatic assays indicated that, as expected, the acid/base glutamate residue is crucial for the glycosylation step and partly contributes to deglycosylation. Moreover, a conserved tyrosine residue in the -1 subsite, Tyr201, plays a determinant role in both the glycosylation and deglycosylation steps, since the GEI was trapped in the RBcel1_Y201F variant. The approach used to obtain the GEI presented here could easily be transposed to other retaining GHs in clan GH-A.


Authors: Dutoit, R., Collet, L., Galleni, M., Bauvois, C.
Glycoside hydrolase family 5: structural snapshots highlighting the involvement of two conserved residues in catalysis.,Collet L, Vander Wauven C, Oudjama Y, Galleni M, Dutoit R Acta Crystallogr D Struct Biol. 2021 Feb 1;77(Pt 2):205-216. doi:, 10.1107/S2059798320015557. Epub 2021 Jan 26. PMID:33559609<ref>PMID:33559609</ref>


Description: Crystal structure of the endo-1,4-glucanase RBcel1 E135A with cellotriose
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Collet, L]]
<div class="pdbe-citations 5ljf" style="background-color:#fffaf0;"></div>
[[Category: Dutoit, R]]
 
[[Category: Bauvois, C]]
==See Also==
[[Category: Galleni, M]]
*[[Glucanase 3D structures|Glucanase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Uncultured bacterium]]
[[Category: Bauvois C]]
[[Category: Collet L]]
[[Category: Dutoit R]]
[[Category: Galleni M]]
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