4b5j: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:


==Neisseria AP endonuclease bound to the substrate with an orphan Adenine base==
==Neisseria AP endonuclease bound to the substrate with an orphan Adenine base==
<StructureSection load='4b5j' size='340' side='right' caption='[[4b5j]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='4b5j' size='340' side='right'caption='[[4b5j]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4b5j]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"diplokokkus_intracellularis_meningitidis"_(sic)_weichselbaum_1887 "diplokokkus intracellularis meningitidis" (sic) weichselbaum 1887]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B5J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B5J FirstGlance]. <br>
<table><tr><td colspan='2'>[[4b5j]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B5J FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4b5f|4b5f]], [[4b5g|4b5g]], [[4b5h|4b5h]], [[4b5i|4b5i]], [[4b5m|4b5m]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Exodeoxyribonuclease_III Exodeoxyribonuclease III], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.11.2 3.1.11.2] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b5j OCA], [https://pdbe.org/4b5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b5j RCSB], [https://www.ebi.ac.uk/pdbsum/4b5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b5j ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4b5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b5j OCA], [http://pdbe.org/4b5j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4b5j RCSB], [http://www.ebi.ac.uk/pdbsum/4b5j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4b5j ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q7DD47_NEIMB Q7DD47_NEIMB]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Exodeoxyribonuclease III]]
[[Category: Large Structures]]
[[Category: Baldwin, G S]]
[[Category: Neisseria meningitidis]]
[[Category: Carpenter, E P]]
[[Category: Baldwin GS]]
[[Category: Freemont, P S]]
[[Category: Carpenter EP]]
[[Category: Jensen, K]]
[[Category: Freemont PS]]
[[Category: Lu, D]]
[[Category: Jensen K]]
[[Category: Macdonald, J T]]
[[Category: Lu D]]
[[Category: Silhan, J]]
[[Category: MacDonald JT]]
[[Category: Tang, C M]]
[[Category: Silhan J]]
[[Category: Hydrolase-dna complex]]
[[Category: Tang CM]]