5mtz: Difference between revisions

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New page: '''Unreleased structure''' The entry 5mtz is ON HOLD until Paper Publication Authors: Li de la Sierra-Gallay, I., Miao, M., van Tilbergh, H. Description: Crystal structure of a long fo...
 
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'''Unreleased structure'''


The entry 5mtz is ON HOLD  until Paper Publication
==Crystal structure of a long form RNase Z from yeast==
<StructureSection load='5mtz' size='340' side='right'caption='[[5mtz]], [[Resolution|resolution]] 2.99&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5mtz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MTZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MTZ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.99&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mtz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mtz OCA], [https://pdbe.org/5mtz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mtz RCSB], [https://www.ebi.ac.uk/pdbsum/5mtz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mtz ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RNZ_YEAST RNZ_YEAST] Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
tRNAs are synthesized as precursor RNAs that have to undergo processing steps to become functional. Yeast Trz1 is a key endoribonuclease involved in the 3 maturation of tRNAs in all domains of life. It is a member of the beta-lactamase family of RNases, characterized by an HxHxDH sequence motif involved in coordination of catalytic Zn-ions. The RNase Z family consists of two subfamilies: the short (250-400 residues) and the long forms (about double in size). Short form RNase Z enzymes act as homodimers: one subunit embraces tRNA with a protruding arm, while the other provides the catalytic site. The long form is thought to contain two fused beta-lactamase domains within a single polypeptide. Only structures of short form RNase Z enzymes are known. Here we present the 3.1 A crystal structure of the long-form Trz1 from Saccharomyces cerevisiae. Trz1 is organized into two beta-lactamase domains connected by a long linker. The N-terminal domain has lost its catalytic residues, but retains the long flexible arm that is important for tRNA binding, while it is the other way around in the C-terminal domain. Trz1 likely evolved from a duplication and fusion of the gene encoding the monomeric short form RNase Z.


Authors: Li de la Sierra-Gallay, I., Miao, M., van Tilbergh, H.
The crystal structure of Trz1, the long form RNase Z from yeast.,Ma M, Li de la Sierra-Gallay I, Lazar N, Pellegrini O, Durand D, Marchfelder A, Condon C, van Tilbeurgh H Nucleic Acids Res. 2017 Jun 2;45(10):6209-6216. doi: 10.1093/nar/gkx216. PMID:28379452<ref>PMID:28379452</ref>


Description: Crystal structure of a long form RNase Z from yeast
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Van Tilbergh, H]]
<div class="pdbe-citations 5mtz" style="background-color:#fffaf0;"></div>
[[Category: Miao, M]]
 
[[Category: Li De La Sierra-Gallay, I]]
==See Also==
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Li de la Sierra-Gallay I]]
[[Category: Miao M]]
[[Category: Van Tilbeurgh H]]
Retrieved from "https://proteopedia.org/5mtz"