1v3y: Difference between revisions

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[[Image:1v3y.jpg|left|200px]]


{{Structure
==The crystal structure of peptide deformylase from Thermus thermophilus HB8==
|PDB= 1v3y |SIZE=350|CAPTION= <scene name='initialview01'>1v3y</scene>, resolution 1.81&Aring;
<StructureSection load='1v3y' size='340' side='right'caption='[[1v3y]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene>
<table><tr><td colspan='2'>[[1v3y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V3Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V3Y FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v3y OCA], [https://pdbe.org/1v3y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v3y RCSB], [https://www.ebi.ac.uk/pdbsum/1v3y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v3y ProSAT], [https://www.topsan.org/Proteins/RSGI/1v3y TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v3y OCA], [http://www.ebi.ac.uk/pdbsum/1v3y PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1v3y RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/DEF_THETH DEF_THETH] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).
 
== Evolutionary Conservation ==
'''The crystal structure of peptide deformylase from Thermus thermophilus HB8'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/1v3y_consurf.spt"</scriptWhenChecked>
1V3Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V3Y OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Peptide deformylase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v3y ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Ito, K.]]
[[Category: Ito K]]
[[Category: Kamo, M.]]
[[Category: Kamo M]]
[[Category: Kudo, N.]]
[[Category: Kudo N]]
[[Category: Lee, W C.]]
[[Category: Lee WC]]
[[Category: Motoshim, H.]]
[[Category: Motoshim H]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Tanokura M]]
[[Category: Tanokura, M.]]
[[Category: peptide deformylase]]
[[Category: protein synthesis]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:19:09 2008''
Retrieved from "https://proteopedia.org/1v3y"