5lcm

STRUCTURE OF the RAD14 DNA-binding domain IN COMPLEX WITH N2-acetylaminonaphtyl- GUANINE CONTAINING DNA

spinqualitylabelsall models 5lcm, resolution 1.90Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5lcm is a 4 chain structure with sequence from Saccharomyces cerevisiae and Saccharomyces cerevisiae S288C. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 1.9Å Ligands: 6TW, ZN Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function RAD14_YEAST Involved in nucleotide excision repair. Binds specifically to damaged DNA. Required for the incision step. Publication Abstract from PubMed Aromatic amines are strongly carcinogenic compounds. They are activated in the liver to give reactive nitrenium ions that are known to react with the nucleobases within the DNA duplex. The reaction occurs predominantly at the C8-position of the dG base, which gives C8-acetyl-aryl-, or C8-aryl-dG adducts in an electrophilic aromatic substitution reaction. Alternatively, reaction with the exocyclic 2-NH(2) group is observed. While the C8-adducts retain the base pairing properties, base pairing is strongly compromised in the case of the N(2)-adducts. Here we show crystal structures of two DNA lesions, N(2)-acetylnaphthyl-dG and C8-fluorenyl-dG within a DNA duplex recognized by the repair protein Rad14. The structures confirm that two molecules of the repair protein recognize the lesion by induction of a 72 degrees or 78 degrees kink at the site of the lesion. Importantly, the same overall kinked structure is induced by binding of the repair proteins although the lesions differ structurally, resulting in distinct stacking interactions of the lesions within the duplex. The result suggests that the repair protein XPA/Rad14 is a sensor that recognizes flexibility. The protein converts the information that structurally different lesions are present in the duplex into a unifying sharply kinked recognition motif. Structural insights into the recognition of N(2)-aryl- and C8-aryl DNA lesions by the repair protein XPA/Rad14.,Ebert C, Simon N, Schneider S, Carell T Chembiochem. 2017 Apr 26. doi: 10.1002/cbic.201700169. PMID:28444956 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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