1wkh: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1wkh.gif|left|200px]]


{{Structure
==Acetylornithine aminotransferase from thermus thermophilus HB8==
|PDB= 1wkh |SIZE=350|CAPTION= <scene name='initialview01'>1wkh</scene>, resolution 2.25&Aring;
<StructureSection load='1wkh' size='340' side='right'caption='[[1wkh]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=PPE:4-[(1,3-DICARBOXY-PROPYLAMINO)-METHYL]-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM'>PPE</scene>
<table><tr><td colspan='2'>[[1wkh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WKH FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_transaminase Acetylornithine transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.11 2.6.1.11] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PPE:4-[(1,3-DICARBOXY-PROPYLAMINO)-METHYL]-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM'>PPE</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wkh OCA], [https://pdbe.org/1wkh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wkh RCSB], [https://www.ebi.ac.uk/pdbsum/1wkh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wkh ProSAT], [https://www.topsan.org/Proteins/RSGI/1wkh TOPSAN]</span></td></tr>
|RELATEDENTRY=[[1vef|1VEF]], [[1wkg|1WKG]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wkh OCA], [http://www.ebi.ac.uk/pdbsum/1wkh PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1wkh RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/LYSJ_THET8 LYSJ_THET8] Catalyzes the transfer of the amino group of L-glutamate to [LysW]-aminoadipate 6-semialdehyde, generating [LysW]-gamma-L-lysine.[HAMAP-Rule:MF_02084]
 
== Evolutionary Conservation ==
'''Acetylornithine aminotransferase from thermus thermophilus HB8'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wk/1wkh_consurf.spt"</scriptWhenChecked>
1WKH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WKH OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Acetylornithine transaminase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wkh ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Goto, M.]]
[[Category: Goto M]]
[[Category: Hirotsu, K.]]
[[Category: Hirotsu K]]
[[Category: Matsumura, M.]]
[[Category: Matsumura M]]
[[Category: Miyahara, I.]]
[[Category: Miyahara I]]
[[Category: Omi, R.]]
[[Category: Omi R]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: aminotransferase]]
[[Category: plp]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:37:29 2008''

Latest revision as of 13:31, 13 March 2024

Acetylornithine aminotransferase from thermus thermophilus HB8

1wkh, resolution 2.25Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA