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[[Image:1ydy.gif|left|200px]]


{{Structure
==Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli==
|PDB= 1ydy |SIZE=350|CAPTION= <scene name='initialview01'>1ydy</scene>, resolution 1.70&Aring;
<StructureSection load='1ydy' size='340' side='right'caption='[[1ydy]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
<table><tr><td colspan='2'>[[1ydy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDY FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
|GENE= glpQ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03009 GDPD], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK11143 glpQ]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydy OCA], [https://pdbe.org/1ydy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydy RCSB], [https://www.ebi.ac.uk/pdbsum/1ydy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ydy TOPSAN]</span></td></tr>
|RELATEDENTRY=[[1t8q|1T8Q]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ydy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydy OCA], [http://www.ebi.ac.uk/pdbsum/1ydy PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ydy RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/GLPQ_ECOLI GLPQ_ECOLI] Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydy_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydy ConSurf].
<div style="clear:both"></div>


'''Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli'''
==See Also==
 
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1YDY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDY OCA].
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Glycerophosphodiester phosphodiesterase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Almo SC]]
[[Category: Almo, S C.]]
[[Category: Burley SK]]
[[Category: Burley, S K.]]
[[Category: Fedorov E]]
[[Category: Fedorov, E.]]
[[Category: Malashkevich VN]]
[[Category: Malashkevich, V N.]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgxrc]]
[[Category: phosphodiesterase]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:04:15 2008''

Latest revision as of 06:55, 23 August 2023

Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli

1ydy, resolution 1.70Å

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