3krp: Difference between revisions

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==Mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium and GPP==
==Mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium and GPP==
<StructureSection load='3krp' size='340' side='right' caption='[[3krp]], [[Resolution|resolution]] 2.42&Aring;' scene=''>
<StructureSection load='3krp' size='340' side='right'caption='[[3krp]], [[Resolution|resolution]] 2.42&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3krp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Menpi Menpi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KRP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KRP FirstGlance]. <br>
<table><tr><td colspan='2'>[[3krp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mentha_x_piperita Mentha x piperita]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KRP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KRP FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GPP:GERANYL+DIPHOSPHATE'>GPP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.42&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kra|3kra]], [[3krc|3krc]], [[3krf|3krf]], [[3kro|3kro]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GPP:GERANYL+DIPHOSPHATE'>GPP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GPPS Large Subunit ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=34256 MENPI]), GPPS Small subunit ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=34256 MENPI])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3krp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3krp OCA], [https://pdbe.org/3krp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3krp RCSB], [https://www.ebi.ac.uk/pdbsum/3krp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3krp ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dimethylallyltranstransferase Dimethylallyltranstransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.1 2.5.1.1] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3krp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3krp OCA], [http://pdbe.org/3krp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3krp RCSB], [http://www.ebi.ac.uk/pdbsum/3krp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3krp ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9SBR3_MENPI Q9SBR3_MENPI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kr/3krp_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kr/3krp_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Dimethylallyltranstransferase]]
[[Category: Large Structures]]
[[Category: Menpi]]
[[Category: Mentha x piperita]]
[[Category: Chang, T H]]
[[Category: Chang T-H]]
[[Category: Hsieh, F L]]
[[Category: Hsieh F-L]]
[[Category: Ko, T P]]
[[Category: Ko T-P]]
[[Category: Wang, A H.J]]
[[Category: Wang AH-J]]
[[Category: Isoprene biosynthesis]]
[[Category: Isoprenyl pyrophosphate synthase]]
[[Category: Prenyltransferase]]
[[Category: Transferase]]

Latest revision as of 16:17, 1 November 2023

Mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium and GPP

3krp, resolution 2.42Å

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