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New page: ==X-ray Crystal Structure of a Pyridoxine 5-prime-phosphate synthase from Pseudomonas aeruginosa== <StructureSection load='5dlc' size='340' side='right' caption='5dlc, [[Resolution|re...
 
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==X-ray Crystal Structure of a Pyridoxine 5-prime-phosphate synthase from Pseudomonas aeruginosa==
==X-ray Crystal Structure of a Pyridoxine 5-prime-phosphate synthase from Pseudomonas aeruginosa==
<StructureSection load='5dlc' size='340' side='right' caption='[[5dlc]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
<StructureSection load='5dlc' size='340' side='right'caption='[[5dlc]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5dlc]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DLC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DLC FirstGlance]. <br>
<table><tr><td colspan='2'>[[5dlc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DLC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DLC FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pdxJ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyridoxine_5'-phosphate_synthase Pyridoxine 5'-phosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.99.2 2.6.99.2] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dlc OCA], [https://pdbe.org/5dlc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dlc RCSB], [https://www.ebi.ac.uk/pdbsum/5dlc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dlc ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dlc OCA], [http://pdbe.org/5dlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dlc RCSB], [http://www.ebi.ac.uk/pdbsum/5dlc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dlc ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/PDXJ_PSEAB PDXJ_PSEAB]] Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.[HAMAP-Rule:MF_00279]  
[https://www.uniprot.org/uniprot/PDXJ_PSEAB PDXJ_PSEAB] Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.[HAMAP-Rule:MF_00279]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Pyridoxine 5'-phosphate synthase]]
[[Category: Large Structures]]
[[Category: Abendroth, J]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Edwards, T E]]
[[Category: Abendroth J]]
[[Category: Fairman, J W]]
[[Category: Edwards TE]]
[[Category: Lorimer, D]]
[[Category: Fairman JW]]
[[Category: Structural genomic]]
[[Category: Lorimer D]]
[[Category: Psuedomonas aeruginosa]]
[[Category: Ssgcid]]
[[Category: Transferase]]

Latest revision as of 21:47, 28 June 2023

X-ray Crystal Structure of a Pyridoxine 5-prime-phosphate synthase from Pseudomonas aeruginosa

5dlc, resolution 2.65Å

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