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==Benzaldehyde Dehydrogenase, a Class 3 Aldehyde Dehydrogenase, with bound NADP+ and Benzoate Adduct==
==Benzaldehyde Dehydrogenase, a Class 3 Aldehyde Dehydrogenase, with bound NADP+ and Benzoate Adduct==
<StructureSection load='5ucd' size='340' side='right' caption='[[5ucd]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
<StructureSection load='5ucd' size='340' side='right'caption='[[5ucd]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5ucd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_fluorescens_putidus"_flugge_1886 "bacillus fluorescens putidus" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5UCD FirstGlance]. <br>
<table><tr><td colspan='2'>[[5ucd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UCD FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZBZ:S-(PHENYLCARBONYL)-L-CYSTEINE'>ZBZ</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=ZBZ:S-(PHENYLCARBONYL)-L-CYSTEINE'>ZBZ</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mdlD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=303 "Bacillus fluorescens putidus" Flugge 1886])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ucd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ucd OCA], [https://pdbe.org/5ucd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ucd RCSB], [https://www.ebi.ac.uk/pdbsum/5ucd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ucd ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ucd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ucd OCA], [http://pdbe.org/5ucd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ucd RCSB], [http://www.ebi.ac.uk/pdbsum/5ucd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ucd ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/MDLD_PSEPU MDLD_PSEPU]] NAD or NADP-dependent benzaldehyde dehydrogenase that catalyzes the conversion of benzaldehyde into benzoate in the (R)-mandelate degradation pathway.<ref>PMID:12670968</ref>
[https://www.uniprot.org/uniprot/MDLD_PSEPU MDLD_PSEPU] NAD or NADP-dependent benzaldehyde dehydrogenase that catalyzes the conversion of benzaldehyde into benzoate in the (R)-mandelate degradation pathway.<ref>PMID:12670968</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus fluorescens putidus flugge 1886]]
[[Category: Large Structures]]
[[Category: Kneen, M M]]
[[Category: Pseudomonas putida]]
[[Category: Kreinbring, C A]]
[[Category: Kneen MM]]
[[Category: McLeish, M J]]
[[Category: Kreinbring CA]]
[[Category: Petsko, G A]]
[[Category: McLeish MJ]]
[[Category: Prasad, S]]
[[Category: Petsko GA]]
[[Category: Ringe, D]]
[[Category: Prasad S]]
[[Category: Zahniser, M P.D]]
[[Category: Ringe D]]
[[Category: Adduct]]
[[Category: Zahniser MPD]]
[[Category: Class 3 aldehyde dehydrogenase]]
[[Category: Covalent catalysis]]
[[Category: Dehydrogenase]]
[[Category: Mandelate racemase pathway]]
[[Category: Nadp+]]
[[Category: Oxidoreductase]]