5nm8: Difference between revisions

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==Structure of PipY, the COG0325 family member of Synechococcus elongatus PCC7942, with PLP bound==
==Structure of PipY, the COG0325 family member of Synechococcus elongatus PCC7942, with PLP bound==
<StructureSection load='5nm8' size='340' side='right' caption='[[5nm8]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
<StructureSection load='5nm8' size='340' side='right'caption='[[5nm8]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5nm8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anacystis_nidulans_r2 Anacystis nidulans r2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NM8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NM8 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5nm8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus_PCC_7942_=_FACHB-805 Synechococcus elongatus PCC 7942 = FACHB-805]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NM8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NM8 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5nlc|5nlc]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Synpcc7942_2060 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1140 Anacystis nidulans R2])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nm8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nm8 OCA], [https://pdbe.org/5nm8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nm8 RCSB], [https://www.ebi.ac.uk/pdbsum/5nm8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nm8 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nm8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nm8 OCA], [http://pdbe.org/5nm8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nm8 RCSB], [http://www.ebi.ac.uk/pdbsum/5nm8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nm8 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q31LH9_SYNE7 Q31LH9_SYNE7]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Anacystis nidulans r2]]
[[Category: Large Structures]]
[[Category: Contreras, A]]
[[Category: Synechococcus elongatus PCC 7942 = FACHB-805]]
[[Category: Forcada-Nadal, A]]
[[Category: Contreras A]]
[[Category: Rubio, V]]
[[Category: Forcada-Nadal A]]
[[Category: Tremino, L]]
[[Category: Rubio V]]
[[Category: Fold type iii plp-protein]]
[[Category: Tremino L]]
[[Category: Plp-binding protein]]
[[Category: Pyridoxal phosphate]]
[[Category: Schiff base]]
[[Category: Vitamin b6]]