5j4p: Difference between revisions

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==DIY G-Quadruplexes: Solution structure of d(GGTTTGGTTTTGGTTTGG) in sodium==
==DIY G-Quadruplexes: Solution structure of d(GGTTTGGTTTTGGTTTGG) in sodium==
<StructureSection load='5j4p' size='340' side='right' caption='[[5j4p]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
<StructureSection load='5j4p' size='340' side='right'caption='[[5j4p]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5j4p]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J4P FirstGlance]. <br>
<table><tr><td colspan='2'>[[5j4p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J4P FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j4p OCA], [http://pdbe.org/5j4p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j4p RCSB], [http://www.ebi.ac.uk/pdbsum/5j4p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j4p ProSAT]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j4p OCA], [https://pdbe.org/5j4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j4p RCSB], [https://www.ebi.ac.uk/pdbsum/5j4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j4p ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The main challenge in DNA quadruplex design is to encode a three-dimensional structure into the primary sequence, despite its multiple, repetitive guanine segments. We identify and detail structural elements describing all 14 feasible canonical quadruplex scaffolds and demonstrate their use in control of design. This work outlines a new roadmap for implementation of targeted design of quadruplexes for material, biotechnological, and therapeutic applications.
Encoding canonical DNA quadruplex structure.,Dvorkin SA, Karsisiotis AI, Webba da Silva M Sci Adv. 2018 Aug 31;4(8):eaat3007. doi: 10.1126/sciadv.aat3007. eCollection 2018, Aug. PMID:30182059<ref>PMID:30182059</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 5j4p" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Dvorkin, S A]]
[[Category: Large Structures]]
[[Category: Silva, M Webba da]]
[[Category: Synthetic construct]]
[[Category: Dna]]
[[Category: Dvorkin SA]]
[[Category: Structure from molmol]]
[[Category: Webba da Silva M]]
[[Category: Structure from programmed design]]
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